Read Pdbstr - Revision history

Bell: 6 revisions

2014-03-28T03:53:15Z

6 revisions

New page

'''read_pdbstr''' in an API-only function which reads a pdb file from a Python string. This feature can be used to load or update structures into PyMOL without involving any temporary files.

===PYMOL API ONLY===
<source lang="python">
cmd.read_pdbstr( string pdb-content, string object name
[ ,int state [ ,int finish [ ,int discrete ] ] ] )
</source>

===NOTES===
'''state''' is a 1-based state index for the object.

'''finish''' is a flag (0 or 1) which can be set to zero to improve [[:Category:Performance|performance]] when loading large numbers of objects, but you must call "finish_object" when you are done.

'''discrete''' is a flag (0 or 1) which tells PyMOL that there will be no overlapping atoms in the PDB files being loaded. '''discrete''' objects save memory but can not be edited.

[[Category:Commands|Read Pdbstr]]
[[Category:Performance|Read Pdbstr]]
[[Category:States|Read Pdbstr]]

Vinnyrose at 14:20, 20 June 2009

2009-06-20T14:20:51Z

New page

===DESCRIPTION===
'''read_pdbstr''' in an API-only function which reads a pdb file from a Python string. This feature can be used to load or update structures into PyMOL without involving any temporary files.

===PYMOL API ONLY===
<source lang="python">
cmd.read_pdbstr( string pdb-content, string object name
[ ,int state [ ,int finish [ ,int discrete ] ] ] )
</source>

===NOTES===
'''state''' is a 1-based state index for the object.

'''finish''' is a flag (0 or 1) which can be set to zero to improve [[:Category:Performance|performance]] when loading large numbers of objects, but you must call "finish_object" when you are done.

'''discrete''' is a flag (0 or 1) which tells PyMOL that there will be no overlapping atoms in the PDB files being loaded. '''discrete''' objects save memory but can not be edited.

[[Category:Commands|Read Pdbstr]]
[[Category:Performance|Read Pdbstr]]
[[Category:States|Read Pdbstr]]

Tree at 05:03, 23 February 2005

2005-02-23T05:03:25Z

New page

===DESCRIPTION====

"read_pdbstr" in an API-only function which reads a pdb file from a
Python string. This feature can be used to load or update
structures into PyMOL without involving any temporary files.

===PYMOL API ONLY===
<source lang="python">
cmd.read_pdbstr( string pdb-content, string object name
[ ,int state [ ,int finish [ ,int discrete ] ] ] )
</source>

===NOTES===

"state" is a 1-based state index for the object.

"finish" is a flag (0 or 1) which can be set to zero to improve
performance when loading large numbers of objects, but you must
call "finish_object" when you are done.

"discrete" is a flag (0 or 1) which tells PyMOL that there will be
no overlapping atoms in the PDB files being loaded. "discrete"
objects save memory but can not be edited.

[[Category:Commands|read_pdbstr]]