Pytms - Revision history

Bell: 1 revision

2015-12-14T04:40:40Z

1 revision

2015-11-19T15:34:37Z

2015-07-09T20:24:04Z

2 revisions

2015-06-07T21:02:35Z

Correct link to raw plugin file in repo.

2015-06-07T20:41:34Z

Add plugins category.

2015-01-18T05:46:01Z

4 revisions

2014-12-04T11:17:26Z

2014-12-04T11:13:33Z

2014-12-04T11:06:37Z

created content for Pytms page

2014-07-02T14:44:02Z

Created page with "NB! This page has been created pro forma and the page content is pending, but will follow in the near future."

New page

NB! This page has been created pro forma and the page content is pending, but will follow in the near future.

@@ Line 8: / Line 8: @@
 '''PyTMs''' is a PyMOL plugin that enables to easily introduce a set of common post-translational modifications (PTMs) into protein models.<br>
-Latest version: '''1.1'''<br>
+Latest version: '''1.2 (November 2015)'''<br>
 ==Installation==
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 | style="text-align:center;"| nitration
 | style="text-align:center;"| Tyrosine (Tryptophan)
 | style="text-align:center;"| No
 |-
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 * when using the GUI menu, the modification process can be followed in the display window
 ==References==
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 * [[Git intro]]
 * [[Plugin_manager]]
 [[Category:Plugins]]

@@ Line 1: / Line 1: @@
 {{Infobox script-repo
 |type      = plugin
-|filename  = pytms.py
+|filename  = plugins/pytms.py
 |author    = [[User:Andwar|Andreas Warnecke]]
 |license   = GPL-2.0

@@ Line 167: / Line 167: @@
 * [[Plugin_manager]]
 [[Category:Script_Library]]
 [[Category:Biochemical_Properties]]
 [[Category:UI_Scripts]]
 [[Category:Biochemical_Scripts]]

@@ Line 160: / Line 160: @@
 The original citation can be found on [http://www.ncbi.nlm.nih.gov/pubmed/25431162 PubMED]
 A current (non-repository) version of PyTMs can be downloaded here: [https://github.com/andwar/Pymol-script-repo/blob/master/plugins/pytms.py pytms.py]<br>
-In case of suggestions, questions or feedback please feel free to contact me: [[User:Andwar]]
+In case of suggestions, questions or feedback please feel free to [[User:Andwar| contact me]].

@@ Line 111: / Line 111: @@
-Incentive PyMOL (> version 1.7) support custom property selectors.<br>
+Incentive PyMOL version (>1.7) support custom property selectors.<br>
 PyTMs supports these by intoducting the property '''p.PTM''' selector (cf. table above), which will select the altered PTM atoms:<br>
 <syntaxhighlight lang="python">
@@ Line 146: / Line 146: @@
 PyTMs also enables the user to sub-select surface accessible residues. This corresponds to an integrated version of [[FindSurfaceResidues]] by Jason Vertrees. This option is enables by providing the required cutoff (in A^2).
-| text-align:center;" | '''Animation of optimization with sterical vdW clashes:'''<br>[[Image:pytms_optimization_animation.gif|pytms example: optimization, animation, clashes]]
+| text-align:center;" | '''Animation of optimization with steric vdW clashes:'''<br>[[Image:pytms_optimization_animation.gif|pytms example: optimization, animation, clashes]]
 |}
@@ Line 164: / Line 164: @@
 ==SEE ALSO==
-[[Git intro]] [[Plugin_manager]]
+* [[Git intro]]
 [[Category:Script_Library]]

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