Pair fit - Revision history

Pyadmin: 12 revisions

2014-03-28T02:00:28Z

12 revisions

Hongbo zhu: /* USER EXAMPLES/COMMENTS */

2013-11-20T09:52:54Z

USER EXAMPLES/COMMENTS

Hongbo zhu: correct selection macro in the 1st example

2013-05-27T11:33:37Z

correct selection macro in the 1st example

Hongbo zhu: add examples and notes copied from PyMOL fitting.py

2013-02-27T09:59:23Z

add examples and notes copied from PyMOL fitting.py

Tlinnet: moved Pair Fit to Pair fit: small letters

2012-01-15T14:28:08Z

moved Pair Fit to Pair fit: small letters

New page

[[Pair_Fit]] fits a set of atom pairs between two models. Each atom in each pair must be specified individually, which can be tedious to enter manually. Script files are recommended when using this command.

===USAGE===
<source lang="python">
pair_fit (selection), (selection), [ (selection), (selection) [ ...] ]
</source>

===USER EXAMPLES/COMMENTS===
An description of selection caveats for these commands may be found at [[Intra_Rms]].

===SEE ALSO===
[[Fit]], [[Rms]], [[Rms_Cur]], [[Intra_Fit]], [[Intra_Rms]], [[Intra_Rms_Cur]]

[[Category:Commands|Pair Fit]]
[[Category:Structure_Alignment|Pair Fit]]

Vinnyrose at 14:18, 20 June 2009

2009-06-20T14:18:27Z

New page

===DESCRIPTION===
[[Pair_Fit]] fits a set of atom pairs between two models. Each atom in each pair must be specified individually, which can be tedious to enter manually. Script files are recommended when using this command.

===USAGE===
<source lang="python">
pair_fit (selection), (selection), [ (selection), (selection) [ ...] ]
</source>

===USER EXAMPLES/COMMENTS===
An description of selection caveats for these commands may be found at [[Intra_Rms]].

===SEE ALSO===
[[Fit]], [[Rms]], [[Rms_Cur]], [[Intra_Fit]], [[Intra_Rms]], [[Intra_Rms_Cur]]

[[Category:Commands|Pair Fit]]
[[Category:Structure_Alignment|Pair Fit]]

Tree at 05:29, 21 February 2005

2005-02-21T05:29:10Z

New page

===DESCRIPTION===
"pair_fit" fits a set of atom pairs between two models. Each atom
in each pair must be specified individually, which can be tedious
to enter manually. Script files are recommended when using this
command.

===USAGE===
pair_fit (selection), (selection), [ (selection), (selection) [ ...] ]

===USER EXAMPLES/COMMENTS===

===SEE ALSO===

[[Cmd fit]], [[Cmd rms]], [[Cmd rms_cur]], [[Cmd intra_fit]], [[Cmd intra_rms]], [[Cmd intra_rms_cur]]

[[Category:Commands|pair_fit]]

@@ Line 9: / Line 9: @@
 <syntaxhighlight lang="python">
 # superimpose protA residues 10-25 and 33-46 to protB residues 22-37 and 41-54:
-pair_fit protA/10-25+33-46/CA, protB/22-37+41-54/CA
+pair_fit protA///10-25+33-46/CA, protB///22-37+41-54/CA
 # superimpose ligA atoms C1, C2, and C4 to ligB atoms C8, C4, and C10, respectively:
 pair_fit ligA////C1, ligB////C8, ligA////C2, ligB////C4, ligA////C3, ligB////C10

← Older revision	Revision as of 02:00, 28 March 2014
(No difference)

@@ Line 20: / Line 20: @@
 ===USER EXAMPLES/COMMENTS===
-An description of selection caveats for these commands may be found at [[Intra_Rms]].
+An description of selection caveats for these commands may be found at [[Rms]].
 ===SEE ALSO===

@@ Line 1: / Line 1: @@
 [[Pair_Fit]] fits a set of atom pairs between two models.  Each atom in each pair must be specified individually, which can be tedious to enter manually.  Script files are recommended when using this command.
@@ Line 6: / Line 5: @@
 pair_fit (selection), (selection), [ (selection), (selection) [ ...] ]
 </source>
 ===USER EXAMPLES/COMMENTS===