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Mesh - Revision history
2026-05-25T02:12:34Z
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Pyadmin
https://wiki.pymol.org/index.php?title=Mesh&diff=6961&oldid=prev
Karo at 08:53, 3 August 2010
2010-08-03T08:53:40Z
<p></p>
<p><b>New page</b></p><div>=Overview=<br />
PyMOL has a web-like, [[Mesh]] representation, as shown in the example images below.<br />
<br />
Using the internal GUI, you may enable mesh by clicking the box with the letter '''S''' in it and selecting '''mesh'''.<br />
<br />
=Syntax=<br />
<source lang="python"><br />
# show the selection, SEL, in mesh<br />
show mesh, SEL<br />
<br />
# using the 'as' keyword<br />
as mesh, SEL<br />
</source><br />
<br />
=Example=<br />
<source lang="python"><br />
select B, i. 40-110<br />
show mesh, B<br />
</source><br />
<br />
<br />
<gallery widths="175px" heights="175px"><br />
Image:Mesh_ex.png|Mesh Representation Example<br />
Image:Mesh_rm0.png|Mesh in ray_trace_mode,0<br />
Image:Mesh_rm3.png|Mesh in ray_trace_mode,3; burnt and probably not what you're looking for.<br />
Image:Mesh_w05.png|Mesh with width of 0.5, half of normal<br />
Image:5ABP.png|Using mesh is a great way to show enclosed pockes.<br />
</gallery><br />
<br />
== Settings ==<br />
*[[cavity_cull]]<br />
*[[mesh_carve_cutoff]] <br />
*[[mesh_cutoff]] <br />
*[[mesh_quality]] <br />
*[[mesh_carve_selection]] <br />
*[[mesh_grid_max]] <br />
*[[mesh_radius]] <br />
*[[mesh_carve_state]] <br />
*[[mesh_lighting]] <br />
*[[mesh_skip]] <br />
*[[mesh_clear_cutoff]] <br />
*[[mesh_mode]] <br />
*[[mesh_solvent]] <br />
*[[mesh_clear_selection]] <br />
*[[mesh_negative_color]] <br />
*[[mesh_type]] <br />
*[[mesh_clear_state]] <br />
*[[mesh_negative_visible]] <br />
*[[mesh_width]]<br />
*[[mesh_color]] <br />
*[[mesh_normals]] <br />
<br />
== Notes ==<br />
* Mesh doesn't ray trace well in ''set [ray_trace_mode]], 3''. Try setting this to ''0'' if you mesh looks wonky.<br />
<br />
== See Also ==<br />
[[Isomesh]] [[Surface]]<br />
<br />
[[Category:Representations|Mesh]]</div>
Karo