Cchem: 13 revisions

2017-03-06T06:13:45Z

13 revisions

Speleo3: loadall

2017-03-02T15:15:24Z

loadall

Pyadmin: 1 revision

2014-03-28T02:16:18Z

1 revision

Newacct at 08:05, 27 November 2009

2009-11-27T08:05:39Z

New page

== Overview ==
Load all files of the suffix '''suff''' from the directory '''dirName''', where '''suff''' and '''dirName''' are function parameters.

== Install ==
# copy the source below to the a file called "loadDir.pml" somewhere on your computer
# load the file with "run /your/path/toLoadDir/loadDir.pml"
# run loadDir. See examples below.

== Examples ==
<source lang="python">
# load the script
run ~/loadDir.pml

# load all SD files from /tmp
loadDir /tmp, sdf
loadDir /tmp, .sdf
loadDir /tmp, *.sdf
# even stupid stuff works; hopefully as one would want.
# load all PDBs from /tmp
loadDir /tmp, foo.woo.pdb

# load all the PDBs in all the directories under ./binders/ERK
loadDir ./binders/ERK/*, .pdb

# load the PDBs into groups: now we can load all the files in the tree under
# ./ERK into the group "ERK" and the files from ./SYK into the group "SYK"
loadDir ./binders/ERK/*, .pdb, group=ERKb
loadDir ./binders/SYK/*, .pdb, group=SYKb
</source>

== The Code ==
<source lang="python">
from glob import glob
from os.path import sep, basename

def loadDir(dirName=".", suff="pdb", group=None):
"""
Loads all files with the suffix suff (the input parameter) from the directory dirName).

dirName: directory path
suff: file suffix. Should be simply "pdb" or "sdf" or similar. Will accept the
wildcard and dot in case the user doesn't read this. So, "*.pdb", ".pdb",
and "pdb" should work. The suffix can be anything valid that PyMOL knows
how to natively load.
group: groupName to add the files to.

example:
# load all the PDBs in the current directory
loadDir

# load all SD files from /tmp
loadDir /tmp, "sdf"

notes:
make sure you call this script w/o quotes around your parameters:
loadDir ., .pdb
as opposed to
loadDir ".", "*.pdb"
Use the former.
"""

g = dirName + sep + "*." + suff.split(".")[-1]

for c in glob( g ):
cmd.load(c)

if ( group != None ):
cmd.group( group, basename(c).split(".")[0], "add" )

cmd.extend("loadDir", loadDir)
</source>

[[Category:Script_Library|LoadDir]]
[[Category:System_Scripts]]

← Older revision		Revision as of 15:15, 2 March 2017
Line 1:		Line 1:
−	~~== Overview ==~~
	Load all files of the suffix '''suff''' from the directory '''dirName''', where '''suff''' and '''dirName''' are function parameters.		Load all files of the suffix '''suff''' from the directory '''dirName''', where '''suff''' and '''dirName''' are function parameters.
		+
		+	''This script is superseded by the [[loadall]] command, which was added in PyMOL 1.7.2.''

	== Install ==		== Install ==

← Older revision	Revision as of 06:13, 6 March 2017
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← Older revision	Revision as of 02:16, 28 March 2014
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LoadDir - Revision history

Cchem: 13 revisions

Speleo3: loadall

Pyadmin: 1 revision

Newacct at 08:05, 27 November 2009