Lines - Revision history

Pyadmin: 9 revisions

2014-03-28T01:47:14Z

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New page

'''Lines''' is name of the basic representation for atoms and bonds in PyMOL. '''Lines''' is a very simple representation, where each atom bond is displayed as a single colored line, and each atom is displayed as the intersection of any two or more non-terminal bonds.

=Usage=
<source lang="python">
# show everything as lines
show lines

# only show residues 50-80 as lines
show lines, i.50-80
</source>

==Examples==
===Example: Displaying dashed lines between two atoms===
The following commands will create a dashed line between two atoms.
<source lang="python">
# first, create two named selections
select a, ///A/501/02
select b, ///B/229/N
# calculate & show the distance from selection a to selection b.
distance d, a, b
# hide just the distance labels; the
# dashed bars should still be shown
hide labels, d
</source>

Technically, the object ''d'' is a labelled distance, only the label is hidden.
When ray-tracing the image, the dashes come out a bit fat. You can slim them with
<source lang="python">
set dash_gap, 0.5
set dash_radius, 0.1
</source>
before the 'ray' command.

[[Image:Lines_ex.png|thumb|Lines Representation Example]]

==See Also==
Please read about other representations in the '''[[:Category:Representations|Representation Category]]'''. <br>
[[Measure_Distance]] <br>
[[Distance]] <br>

[[Category:Representations|Lines]]
[[Category:Commands|Lines]]

Vinnyrose at 13:46, 20 June 2009

2009-06-20T13:46:45Z

Vinnyrose at 13:46, 20 June 2009

2009-06-20T13:46:37Z

Wayne461: /* See Also */

2009-04-17T20:22:24Z

Wayne461: /* See Also */

2009-04-17T20:16:06Z

Wayne461 at 20:15, 17 April 2009

2009-04-17T20:15:43Z

New page

=Overview=
'''Lines''' is name of the basic representation for atoms and bonds in PyMOL. '''Lines''' is a very simple representation, where each atom bond is displayed as a single colored line, and each atom is displayed as the intersection of any two or more non-terminal bonds.

=Usage=
<source lang="python">
# show everything as lines
show lines

# only show residues 50-80 as lines
show lines, i.50-80
</source>

==Examples==
===Example: Displaying dashed lines between two atoms===
The following commands will create a dashed line between two atoms.
<source lang="python">
# first, create two named selections
select a, ///A/501/02
select b, ///B/229/N
# calculate & show the distance from selection a to selection b.
distance d, a, b
# hide just the distance labels; the
# dashed bars should still be shown
hide labels, d
</source>

Technically, the object ''d'' is a labelled distance, only the label is hidden.
When ray-tracing the image, the dashes come out a bit fat. You can slim them with
<source lang="python">
set dash_gap, 0.5
set dash_radius, 0.1
</source>
before the 'ray' command.

[[Image:Lines_ex.png|thumb|Lines Representation Example]]

==See Also==
Please read about other representations in the '''Representation Category'''.
[[Measure_Distance]]
[[Distance]]

[[Category:Representations]]
[[Category:Commands|distance]]

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−	[[Category:Representations]]	+	[[Category:Representations\|Lines]]
	[[Category:Commands\|Lines]]		[[Category:Commands\|Lines]]

← Older revision		Revision as of 13:46, 20 June 2009
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	[[Category:Representations]]		[[Category:Representations]]
−	[[Category:Commands\|~~distance~~]]	+	[[Category:Commands\|Lines]]

@@ Line 36: / Line 36: @@
 ==See Also==
-Please read about other representations in the '''Representation Category'''. <br>
+Please read about other representations in the '''[[:Category:Representations|Representation Category]]'''. <br>
 [[Measure_Distance]] <br>
 [[Distance]] <br>