Join states - Revision history

Cchem: 1 revision

2017-01-09T05:54:54Z

1 revision

Speleo3: 1.7.2

2016-12-19T16:34:56Z

1.7.2

Pyadmin: 1 revision

2014-03-28T01:47:12Z

1 revision

Speleo3: created

2012-07-31T08:41:23Z

created

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{{Infobox psico
|module = psico.creating
}}

[[join_states]] can combine multiple objects to a multi-state object. It's the reverse of [[split_states]].

By default the input objects must be identical with respect to all atom identifiers. Atoms which are missing in any input object are skipped. If any identifier does not match (for example chain) you need ''discrete=-2'' which will match atoms by sequence alignment.

== Usage ==

join_states name [, selection [, discrete ]]

== Arguments ==

* name = string: name of object to create or modify

* selection = string: atoms to include in the new object {default: all}

* discrete = integer
** -2: match atoms by sequence alignment
** -1: Assume identical input objects (matching all atom identifiers) but also check for missing atoms and only include atoms that are present in all input objects {default}
** 0: Assume identical input objects
** 1: Input object may be (totally) different

== Example ==

<syntaxhighlight lang="bash">
$ # launch pymol from terminal with all models from a modeller run
$ pymol foo.B9999*.pdb

PyMOL> # create multi-state model
PyMOL> join_states multifoo, foo*, 0
PyMOL> delete foo*
PyMOL> intra_fit multifoo
</syntaxhighlight>

== See Also ==

* [[split_states]]

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	By default the input objects must be identical with respect to all atom identifiers. Atoms which are missing in any input object are skipped. If any identifier does not match (for example chain) you need ''discrete=-2'' which will match atoms by sequence alignment.		By default the input objects must be identical with respect to all atom identifiers. Atoms which are missing in any input object are skipped. If any identifier does not match (for example chain) you need ''discrete=-2'' which will match atoms by sequence alignment.
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		+	''This command has been integrated in PyMOL 1.7.2''

	== Usage ==		== Usage ==

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