Pyadmin: 1 revision

2014-03-28T02:16:27Z

1 revision

Venky at 16:12, 2 May 2013

2013-05-02T16:12:42Z

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{{Infobox script-repo
|type = plugin
|download = http://emptyewer.github.io/Gyration_tensor
|author = [[User:Venky|Venkatramanan Krishnamani]]
|license = -
}}

== Introduction ==
This program calculates and visualizes the gration tensors of a protein (based on geometry) for each chain in the PDB file.
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==== How to get it ====
git clone https://github.com/emptyewer/Gyration_tensor.git
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==Required Dependencies on Linux and Mac OS X==
* [http://wiki.python.org/moin/TkInter Tkinter] and
* [http://numpy.scipy.org/ Numpy]
sudo apt-get install python-tk python-numpy
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===Installing on Linux===

* Navigate to plugins > install
* Locate the downloaded gyration_tensor.py file in the dialogbox and select 'OK'
* Quit and Restart 'pymol'
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=== Usage ===

* Launch PyMOL
* Navigate to Plugins > Contact Map Visualizer in PyMOL
* When the first dialog box pops up, select PDB file and select 'OK'.
* The plugin calculates and outputs the Magnitude and Direction of the tensors in the debug window and draws the corresponding tensors as a cgo object in the PyMOL opengl window.
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=== Screenshot ===

[[File:Gyration_tensor.png|thumb|800px|center]]
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=== Requests for features are welcome ===

Please see your user account [[User:Venky]].

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== Copyright ==
<source lang=bash>
# Copyright Notice
# ================
#
# The PyMOL Plugin source code in this file is copyrighted, but you are
# free to use and copy it as long as you don't change or remove any of
# the copyright notices.
#
# -----------------------------------------------------------------------------------
# This PyMOL Plugin Gyration Tensor is
# Copyright (C) 2012 by Venkatramanan Krishnamani <venks@andrew.cmu.edu>
#
# All Rights Reserved
#
# Permission to use, copy, modify, distribute, and distribute modified
# versions of this software and its documentation for any purpose and
# without fee is hereby granted, provided that the above copyright
# notice appear in all copies and that both the copyright notice and
# this permission notice appear in supporting documentation, and that
# the name(s) of the author(s) not be used in advertising or publicity
# pertaining to distribution of the software without specific, written
# prior permission.
#
# THE AUTHOR(S) DISCLAIM ALL WARRANTIES WITH REGARD TO THIS SOFTWARE,
# INCLUDING ALL IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS. IN
# NO EVENT SHALL THE AUTHOR(S) BE LIABLE FOR ANY SPECIAL, INDIRECT OR
# CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS OF
# USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE OR
# OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE OR
# PERFORMANCE OF THIS SOFTWARE.
#
</source>
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[[Category:Plugins]]

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Gyration tensor - Revision history

Pyadmin: 1 revision

Venky at 16:12, 2 May 2013