Group - Revision history

Cchem: 1 revision

2017-05-29T19:48:06Z

1 revision

Hongbo zhu: add operation instructions for editing group

2017-05-04T08:17:15Z

add operation instructions for editing group

Pyadmin: 9 revisions

2014-03-28T01:47:05Z

9 revisions

Harijay at 16:51, 11 February 2012

2012-02-11T16:51:36Z

Mglerner at 14:36, 17 February 2011

2011-02-17T14:36:57Z

New page

The [[Group]] command creates or updates a "group" object. The grouped objects are collected underneath a '''+''' sign in the object tree (see images).

[[Group]] is tremendously helpful with multi-state or multi-structure sessions. Wildcards work great, for example:
<source lang="python">
# put all of objState into the group "ensemble".
group ensemble, objState*
</source>

<gallery>
Image:group_off.png|Three EF-Hand proteins loaded into PyMOL
Image:group_on1.png|Applied the group command to the proteins via: "group efHand, *"
Image:group_on2.png|The plus was clicked and expanded to show the hierarchy of objects.
</gallery>

== Usage ==
<source lang="python">
group name, members, action
</source>

== Examples ==

=== Creating, opening and closing ===
<source lang="python">
group efHand, 1cll 1ggz 1sra

# allow addition and removal from the group
group efHand, open
# disallow addition/removal from the group
group efHand, close
</source>

=== More advanced usage of groups and naming ===

<source lang="python">
# names with dots are treated special

set group_auto_mode, 2

# load the example protein

load $TUT/1hpv.pdb, 1hpv.other

# create the new entry called ".protein" in group 1hpv

extract 1hpv.protein, 1hpv.other and polymer

# create ".ligand in the 1hpv group

extract 1hpv.ligand, 1hpv.other and organic

# supports wildcards

show sticks, *.ligand

hide lines, *.protein

show surface, *.protein within 6 of *.ligand

show lines, byres *.protein within 4 of *.ligand

set two_sided_lighting

set transparency, 0.5

set surface_color, white

# Also, to lexicographically sort the names in the control panel:

order *, yes
</source>
== Notes ==
Group objects can usually be used as arguments to commands. It can be processed as a group or as a selection, in which case all the atoms from all objects in the group will be used.

== See Also ==
[[ungroup]] [[order]] [[select]]

[[Category:Commands|Group]]

Vinnyrose at 13:34, 20 June 2009

2009-06-20T13:34:35Z

New page

== Overview ==
The [[Group]] command creates or updates a "group" object. The grouped objects are collected underneath a '''+''' sign in the object tree (see images).

[[Group]] is tremendously helpful with multi-state or multi-structure sessions. Wildcards work great, for example:
<source lang="python">
# put all of objState into the group "ensemble".
group ensemble, objState*
</source>

<gallery>
Image:group_off.png|Three EF-Hand proteins loaded into PyMOL
Image:group_on1.png|Applied the group command to the proteins via: "group efHand, *"
Image:group_on2.png|The plus was clicked and expanded to show the hierarchy of objects.
</gallery>

== Usage ==
<source lang="python">
group name, members, action
</source>

== Example ==
<source lang="python">
group efHand, 1cll 1ggz 1sra

# allow addition and removal from the group
group efHand, open
# disallow addition/removal from the group
group efHand, close
</source>

== Notes ==
Group objects can usually be used as arguments to commands. It can be processed as a group or as a selection, in which case all the atoms from all objects in the group will be used.

== See Also ==
[[ungroup]] [[order]] [[select]]

[[Category:Commands|Group]]

← Older revision		Revision as of 16:51, 11 February 2012
Line 1:		Line 1:
−	The [[Group]] command creates or updates a "group" object. The grouped objects are collected underneath a '''+''' sign in the object tree (see images).	+	The [[Group]] command creates or updates a "group" object. The grouped objects are collected underneath a '''+''' sign in the object tree (see images) in the Pymol Internal Gui.

	[[Group]] is tremendously helpful with multi-state or multi-structure sessions. Wildcards work great, for example:		[[Group]] is tremendously helpful with multi-state or multi-structure sessions. Wildcards work great, for example:

← Older revision	Revision as of 19:48, 29 May 2017
(No difference)

@@ Line 25: / Line 25: @@
 # allow addition and removal from the group
 group efHand, open
 # disallow addition/removal from the group
@@ Line 69: / Line 71: @@
 order *, yes
 </source>
 == Notes ==
 Group objects can usually be used as arguments to commands.  It can be processed as a group or as a selection, in which case all the atoms from all objects in the group will be used.

← Older revision	Revision as of 01:47, 28 March 2014
(No difference)