Grid mode - Revision history

Bell: 15 revisions

2014-03-28T03:06:30Z

15 revisions

Pyadmin: 1 revision

2014-03-28T02:16:15Z

1 revision

Wayne461 at 19:11, 3 August 2011

2011-08-03T19:11:42Z

Karo: Reverted edits by DanielCobb (Talk) to last revision by Inchoate

2010-09-29T20:52:09Z

Reverted edits by DanielCobb (Talk) to last revision by Inchoate

DanielCobb: /* Overview */

2010-09-29T15:36:55Z

Overview

New page

== Overview ==
'''grid_mode''' partitions the screen into a grid and displays each molecule in one grid location. Each molecule rotates, zooms, etc in that grid. A possibly very useful option for PyMOL. Each grid area is assigned a [[grid_slot]] number. This allows you to assign objects to certain grids; very helpful. This can be useful when comparing homologous structures and you want to view and rotate the aligned structures side by side. This is similar to a multiple split screen view of the proteins. You can write your [http://www.customcourseworks.com/ coursework] about it.

'''Hint:''' When using grid_mode with many molecules, it's sometimes good to align their centers of mass. This puts them all squarely in the middle of their grid element. The '''alignto''' command from [[cealign]] can do this for you.

'''Hint:''' If you don't want to align the molecules (it's not reall necessary for grid_mode) you can just center them on some coordinate. See [[COM]].

'''Note:''' Currently (Mar 29, 2008), grid_mode is only available from source and not from the precompiled versions of PyMOL.

== Syntax ==
<source lang="python">
# turn on grid mode
set grid_mode,1

# turn off grid mode
set grid_mode,0
</source>

== Example ==
<gallery>
Image:Gm0.png|grid_mode off. Four molecules shown loaded and aligned.
Image:Gm1.png|grid_mode on. Each molecule is in its own window.
Image:Gm2.png|grid_mode on. Lots of molecules shown.
Image:Wow_grid_mode.png|grid_mode on. 159 proteins shown!
</gallery>

== See Also ==
[[grid_slot]]

[[Category:Settings|Grid_Mode]]

Fa11 at 10:38, 26 September 2010

2010-09-26T10:38:02Z

New page

== Overview ==
'''grid_mode''' partitions the screen into a grid and displays each molecule in one grid location. Each molecule rotates, zooms, etc in that grid. A possibly very useful option for PyMOL. Each grid area is assigned a [[grid_slot]] number. This allows you to assign objects to certain grids; very helpful. This can be useful when comparing homologous structures and you want to view and rotate the aligned structures side by side. This is similar to a multiple split screen view of the proteins.

'''Hint:''' When using grid_mode with many molecules, it's sometimes good to align their centers of mass. This puts them all squarely in the middle of their grid element. The '''alignto''' command from [[cealign]] can do this for you.

'''Hint:''' If you don't want to align the molecules (it's not reall necessary for grid_mode) you can just center them on some coordinate. See [[COM]].

'''Note:''' Currently (Mar 29, 2008), grid_mode is only available from source and not from the precompiled versions of PyMOL.

== Syntax ==
<source lang="python">
# turn on grid mode
set grid_mode,1

# turn off grid mode
set grid_mode,0
</source>
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== Example ==
<gallery>
Image:Gm0.png|grid_mode off. Four molecules shown loaded and aligned.
Image:Gm1.png|grid_mode on. Each molecule is in its own window.
Image:Gm2.png|grid_mode on. Lots of molecules shown.
Image:Wow_grid_mode.png|grid_mode on. 159 proteins shown!
</gallery>

== See Also ==
[[grid_slot]]

[[Category:Settings|Grid_Mode]]

Rebecadd at 11:05, 22 August 2010

2010-08-22T11:05:24Z

New page

== Overview ==
'''grid_mode''' partitions the screen into a grid and displays each molecule in one grid location. Each molecule rotates, zooms, etc in that grid. A possibly very useful option for PyMOL. Each grid area is assigned a [[grid_slot]] number. This allows you to assign objects to certain grids; very helpful. This can be useful when comparing homologous structures and you want to view and rotate the aligned structures side by side. This is similar to a multiple split screen view of the proteins.

'''Hint:''' When using grid_mode with many molecules, it's sometimes good to align their centers of mass. This puts them all squarely in the middle of their grid element. The '''alignto''' command from [[cealign]] can do this for you.

'''Hint:''' If you don't want to align the molecules (it's not reall necessary for grid_mode) you can just center them on some coordinate. See [[COM]].

'''Note:''' Currently (Mar 29, 2008), grid_mode is only available from source and not from the precompiled versions of PyMOL.

== Syntax ==
<source lang="python">
# turn on grid mode
set grid_mode,1

# turn off grid mode
set grid_mode,0
</source>
#[http://www.college-paper.org college essay]

== Example ==
<gallery>
Image:Gm0.png|grid_mode off. Four molecules shown loaded and aligned.
Image:Gm1.png|grid_mode on. Each molecule is in its own window.
Image:Gm2.png|grid_mode on. Lots of molecules shown.
Image:Wow_grid_mode.png|grid_mode on. 159 proteins shown!
</gallery>

== See Also ==
[[grid_slot]]

[[Category:Settings|Grid_Mode]]

Judy: /* See Also */

2010-06-28T08:39:08Z

Slaw at 13:16, 17 April 2008

2008-04-17T13:16:33Z

Slaw at 14:05, 29 March 2008

2008-03-29T14:05:31Z

New page

== Overview ==
'''grid_mode''' partitions the screen into a grid and displays each molecule in one grid location. Each molecule rotates, zooms, etc in that grid. A possibly very useful option for PyMOL. Each grid area is assigned a [[grid_slot]] number. This allows you to assign objects to certain grids; very helpful.

'''Hint:''' When using grid_mode with many molecules, it's sometimes good to align their centers of mass. This puts them all squarely in the middle of their grid element. The '''alignto''' command from [[cealign]] can do this for you.

'''Note:''' Currently (Mar 29, 2008), grid_mode is only available from source and not from the precompiled versions of PyMOL.

== Syntax ==
<source lang="python">
# turn on grid mode
set grid_mode,1

# turn off grid mode
set grid_mode,0
</source>

== Example ==
<gallery>
Image:Gm0.png|grid_mode off. Four molecules shown loaded and aligned.
Image:Gm1.png|grid_mode on. Each molecule is in its own window.
Image:Gm2.png|grid_mode on. Lots of molecules shown.
Image:Wow_grid_mode.png|grid_mode on. 159 proteins shown!
</gallery>

== See Also ==
[[grid_slot]]

[[Category:Settings|Grid_Mode]]

← Older revision	Revision as of 03:06, 28 March 2014
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← Older revision	Revision as of 02:16, 28 March 2014
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@@ Line 4: / Line 4: @@
 '''Hint:''' When using grid_mode with many molecules, it's sometimes good to align their centers of mass.  This puts them all squarely in the middle of their grid element.  The '''alignto''' command from [[cealign]] can do this for you.
-'''Hint:''' If you don't want to align the molecules (it's not reall necessary for grid_mode) you can just center them on some coordinate.  See [[COM]].
+'''Hint:''' If you don't want to align the molecules (it's not really necessary for grid_mode) you can just center them on some coordinate.  See [[COM]].
 '''Note:''' Currently (Mar 29, 2008), grid_mode is only available from source and not from the precompiled versions of PyMOL.

@@ Line 1: / Line 1: @@
 == Overview ==
-'''grid_mode''' partitions the screen into a grid and displays each molecule in one grid location.  Each molecule rotates, zooms, etc in that grid.    A possibly very useful option for PyMOL.  Each grid area is assigned a [[grid_slot]] number.  This allows you to assign objects to certain grids; very helpful.  This can be useful when comparing homologous structures and you want to view and rotate the aligned structures side by side.  This is similar to a multiple split screen view of the proteins. You can write your [http://www.customcourseworks.com/ coursework] about it.
+'''grid_mode''' partitions the screen into a grid and displays each molecule in one grid location.  Each molecule rotates, zooms, etc in that grid.    A possibly very useful option for PyMOL.  Each grid area is assigned a [[grid_slot]] number.  This allows you to assign objects to certain grids; very helpful.  This can be useful when comparing homologous structures and you want to view and rotate the aligned structures side by side.  This is similar to a multiple split screen view of the proteins.
 '''Hint:''' When using grid_mode with many molecules, it's sometimes good to align their centers of mass.  This puts them all squarely in the middle of their grid element.  The '''alignto''' command from [[cealign]] can do this for you.