Get fastastr - Revision history

Cchem: 1 revision

2017-04-03T02:46:00Z

1 revision

Speleo3: print syntax for python 2+3

2017-03-06T17:13:23Z

print syntax for python 2+3

Pyadmin: 2 revisions

2014-03-28T01:46:58Z

2 revisions

Speleo3: rewrite of page

2012-02-08T15:30:21Z

rewrite of page

Tlinnet: Created page with "== cmd.get_fastastr == Do you have a pdb file which come from a modelling program?
Are you unsure about which amino sequence is in the "long" pdb file? What you really want..."

2012-02-08T14:49:58Z

Created page with "== cmd.get_fastastr == Do you have a pdb file which come from a modelling program?<br> Are you unsure about which amino sequence is in the "long" pdb file? What you really want..."

New page

== cmd.get_fastastr ==

Do you have a pdb file which come from a modelling program?<br>
Are you unsure about which amino sequence is in the "long" pdb file?

What you really want is to: '''get the FASTA string''' ?

Then write in pymol:
'''print cmd.get_fastastr('all')'''

That will give you the sequence.

@@ Line 11: / Line 11: @@
 <syntaxhighlight lang="python">
 fetch 1ubq, async=0
-print cmd.get_fastastr('all')
+print(cmd.get_fastastr('all'))
 </syntaxhighlight>

@@ Line 1: / Line 1: @@
-== cmd.get_fastastr ==
+[[get_fastastr]] is an API-only function which returns the one-letter amino acid sequence in FASTA format.
-Do you have a pdb file which come from a modelling program?<br>
+== PyMOL API ==
-What you really want is to: '''get the FASTA string''' ?
+<syntaxhighlight lang="python">
-Then write in pymol:
+== Example ==
-That will give you the sequence.
+<syntaxhighlight lang="python">

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