Get Model - Revision history

Cchem: 10 revisions

2019-04-01T03:11:57Z

10 revisions

Speleo3: py3

2019-03-22T06:27:41Z

py3

Pyadmin: 1 revision

2014-03-28T02:16:26Z

1 revision

New page

'''get_model''' returns a model object.

===PYMOL API===
<source lang="python">
cmd.get_model(string "selection", integer "state" )
</source>

===USAGE===
cmd.get_model("chain A")

===NOTES===
It can be useful to loop through all the atoms of a selection (rather than using the iterate command)
<source lang="python">
atoms = cmd.get_model("chain A")
for at in atoms.atom:
print "ATOM DEFINITION: "+at.chain+" "\
+at.resn+" "\
+str(at.resi)+" "\
+at.name+" "\
+str(at.index)+" "\
+at.b+" "\
+str(at.coord[0])+" "\
+str(at.coord[1])+" "\
+str(at.coord[2])
</source>

===SEE ALSO===
[[Category:Commands|Get Model]]

Slaw at 18:58, 28 September 2009

2009-09-28T18:58:03Z

Vinnyrose at 13:59, 20 June 2009

2009-06-20T13:59:49Z

Slaw at 17:51, 1 April 2009

2009-04-01T17:51:44Z

Momeara: /* NOTES */

2007-09-26T18:41:15Z

NOTES

Momeara: /* NOTES */

2007-09-26T18:39:36Z

NOTES

New page

===DESCRIPTION===
'''get_model''' returns a model object.

===PYMOL API===
<source lang="python">
cmd.get_model(string "selection" )
</source>

===USAGE===
cmd.get_model("chain A")

===NOTES===
It can be useful to loop through all the atoms of a selection (rather than using the iterate command)
<source lang="python">
atoms = cmd.get_model("chain A")
for at in atoms.atom:
print "ATOM DEFINITION: "+at.chain+" "+at.resn+" "+str(at.resi)+" "+at.name+" "+str(at.index)+" "+at.b+" "+str(at.coords[0])+" "+str(at.coords[1])+" "+str(at.coords[2])
</source>

===SEE ALSO===
[[Category:Commands|get_model]]

Tmwsiy at 14:54, 19 May 2005

2005-05-19T14:54:43Z

Tmwsiy at 14:54, 19 May 2005

2005-05-19T14:54:17Z

← Older revision		Revision as of 13:59, 20 June 2009
Line 27:		Line 27:

	===SEE ALSO===		===SEE ALSO===
−	[[Category:Commands\|~~get_model~~]]	+	[[Category:Commands\|Get Model]]

← Older revision	Revision as of 03:11, 1 April 2019
(No difference)

@@ Line 15: / Line 15: @@
 atoms = cmd.get_model("chain A")
 for at in atoms.atom:
-     print "ATOM DEFINITION: "+at.chain+" "\
+     print("ATOM DEFINITION: "+at.chain+" "\
                               +at.resn+" "\
                               +str(at.resi)+" "\
                               +at.name+" "\
                               +str(at.index)+" "\
-                              +at.b+" "\
+                              +"%.2f " % (at.b)\
                               +str(at.coord[0])+" "\
                               +str(at.coord[1])+" "\
-                              +str(at.coord[2])
+                              +str(at.coord[2]))
 </source>
 ===SEE ALSO===
 [[Category:Commands|Get Model]]

@@ Line 4: / Line 4: @@
 ===PYMOL API===
 <source lang="python">
-cmd.get_model(string "selection" )
+cmd.get_model(string "selection", integer "state" )
 </source>