Pyadmin: 7 revisions

2014-03-28T01:46:53Z

7 revisions

Speleo3: get_object_list

2011-08-31T07:58:11Z

get_object_list

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= Overview =
This script returns the list of object names that exist in any given selection. For example, if you have 100 objects loaded (viz. ligand poses from small molecule docking) and select all atoms w/in some cutoff, then you have a selection. What objects are actually in that selection? This script will tell you.

= The Code =
<source lang="python">
from pymol import cmd, stored
def getNamesInSel(sel, sorted=0, reversed=0, quiet=1):
"""
PARAMETERS
sel,
The selection, object or group to iterate over
sorted (boolean),
Should the list be sorted?
reversed (boolean)
Should the list be reversed before returned? (Combined
with the above, you can return a decreasing-sorted list
of names

RETURNS
list[] of strings, representing the object names desired.

"""
rList = cmd.get_object_list('(' + sel + ')')

# if you want the list reversed or sorted,
# uncomment the following lines
if int(sorted):
rList.sort()
if int(reversed):
rList.reverse()

if not int(quiet):
print ' getNamesInSel: ', rList

return rList

cmd.extend("getNamesInSel", getNamesInSel)
</source>

= See Also =
* [[Get_Names]]
* [[get_object_list]]

[[Category:Script_Library]]
[[Category:ObjSel_Scripts]]

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Speleo3: get_object_list