Dssr block - Revision history

Cchem: 1 revision

2020-05-26T05:13:05Z

1 revision

2020-05-18T16:58:25Z

web server link

2018-11-12T04:22:57Z

1 revision

2018-10-17T18:07:22Z

example image

2017-12-11T04:50:14Z

1 revision

2017-11-13T18:34:20Z

fix block_color example

2016-05-01T04:43:44Z

1 revision

2016-04-12T14:03:58Z

block_color

2016-02-08T05:26:51Z

2 revisions

2016-01-22T21:44:41Z

link to blog post

@@ Line 11: / Line 11: @@
 ''Requires the '''x3dna-dssr''' executable, obtainable from http://x3dna.org''
 See also the blog post by DSSR author Xiang-Jun Lu: http://x3dna.org/highlights/dssr-base-blocks-in-pymol-interactively
@@ Line 77: / Line 79: @@
 * [[3DNA]] (old, obsoleted by x3dna-dssr)
 * [[Overview of nucleic acid cartoons]]
 [[Category:Structural_Biology_Scripts]]

@@ Line 5: / Line 5: @@
 |license   = BSD-2-Clause
 }}
 This script adds the [[dssr_block]] command, which is a simple wrapper for the '''DSSR''' program and can create "block" shaped cartoons for nucleic acid bases and base pairs.

@@ Line 68: / Line 68: @@
 <source lang="python">
 fetch 1msy, async=0
-dssr_block block_color=N red : minor 0.9 : major yellow
+dssr_block block_color=N red | minor 0.9 | major yellow
 </source>

@@ Line 24: / Line 24: @@
   dssr_block [ selection [, state [, block_file [, block_depth
-         [, name [, exe ]]]]]]
+         [, block_color [, name [, exe ]]]]]]]
 == Arguments ==
@@ Line 32: / Line 32: @@
 * '''block_file''' = face|edge|wc|equal|minor|gray: Corresponds to the '''--block-file''' option (see [http://x3dna.org/ DSSR manual]). Values can be combined, e.g. "wc-minor". {default: face}
 * '''block_depth''' = float: thickness of rectangular blocks {default: 0.5}
 * '''name''' = str: name of new CGO object {default: dssr_block##}
 * '''exe''' = str: path to "x3dna-dssr" executable {default: x3dna-dssr}
@@ Line 61: / Line 62: @@
 dssr_block 2n2d, 0
 set all_states
 </source>

← Older revision		Revision as of 21:44, 22 January 2016
Line 9:		Line 9:

	''Requires the '''x3dna-dssr''' executable, obtainable from http://x3dna.org''		''Requires the '''x3dna-dssr''' executable, obtainable from http://x3dna.org''
		+
		+	See also the blog post by DSSR author Xiang-Jun Lu: http://x3dna.org/highlights/dssr-base-blocks-in-pymol-interactively

	== Recommended Setup ==		== Recommended Setup ==

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