Colorbydisplacement - Revision history

Pyadmin: 18 revisions

2014-03-28T02:15:08Z

18 revisions

2012-01-15T15:02:30Z

Example 1

2012-01-13T23:22:45Z

2011-12-11T21:34:06Z

2011-12-11T21:32:52Z

2011-12-11T13:00:10Z

2011-12-04T15:00:31Z

Python Code

2011-12-04T15:00:03Z

Python Code

2011-12-01T15:21:14Z

2011-12-01T15:20:19Z

@@ Line 41: / Line 41: @@
 {{Template:PymolScriptRepoDownload|examples/colorbydisplacement_1.pml}}
 <include src="https://raw.github.com/Pymol-Scripts/Pymol-script-repo/master/examples/colorbydisplacement_1.pml" highlight="python" />
 [[Category:Script_Library]]
 [[Category:Structural_Biology_Scripts]]

@@ Line 2: / Line 2: @@
 |type      = script
 |filename  = colorbydisplacement.py
-|author    = [[Users:Tlinnet|Troels E. Linnet]]
+|author    = [[User:Tlinnet|Troels E. Linnet]]
 |license   = BSD
 }}

@@ Line 2: / Line 2: @@
 |type      = script
 |filename  = colorbydisplacement.py
-|author    = Troels E. Linnet
+|author    = [[Users:Tlinnet|Troels E. Linnet]]
 |license   = BSD
 }}

@@ Line 3: / Line 3: @@
 |filename  = colorbydisplacement.py
 |author    = Troels E. Linnet
-|license   = Free
+|license   = BSD
 }}

@@ Line 1: / Line 1: @@
-== Acknowledgement ==
+{{Infobox script-repo
-This pymol script is made by Troels Emtekær Linnet.
+|type      = script
+|filename  = colorbydisplacement.py
-This script is based on the scaffold from [[ColorByRMSD]]. Peace love and harmony goes to Shivender Shandilya and Jason Vertrees.
+|author    = Troels E. Linnet
 == Introduction ==
@@ Line 36: / Line 38: @@
 Residues not in both pdb files is colored black
-== Example Pymol Script ==
+== Example 1 ==
-<syntaxhighlight lang="python">
+{{Template:PymolScriptRepoDownload|examples/colorbydisplacement_1.pml}}
-import colorbydisplacement
+<include src="https://raw.github.com/Pymol-Scripts/Pymol-script-repo/master/examples/colorbydisplacement_1.pml" highlight="python" />
 [[Category:Script_Library]]
 [[Category:Structural_Biology_Scripts]]

← Older revision	Revision as of 02:15, 28 March 2014
(No difference)

@@ Line 66: / Line 66: @@
 == Python Code ==
-{{Template:PymolScriptRepoDownload|colorbydisplacement .py}}
+{{Template:PymolScriptRepoDownload|colorbydisplacement.py}}
 [[Category:Script_Library]]
 [[Category:Structural_Biology_Scripts]]

← Older revision		Revision as of 15:21, 1 December 2011
Line 7:		Line 7:
	This script allows you to color two structures by distance displacement between an Open and Closed form of a protein, as calculated by PyMol's internal distance command. The pairwise distance is calculated between all-atoms. The distance displacement values are stored as B-factors of these residues, which are colored by a ''rainbow'' color spectrum, with blue specifying minimum and red indicating maximum.		This script allows you to color two structures by distance displacement between an Open and Closed form of a protein, as calculated by PyMol's internal distance command. The pairwise distance is calculated between all-atoms. The distance displacement values are stored as B-factors of these residues, which are colored by a ''rainbow'' color spectrum, with blue specifying minimum and red indicating maximum.

−	~~== Code ==~~
	Do keep in mind, all original B-factors values are overwritten!		Do keep in mind, all original B-factors values are overwritten!

@@ Line 5: / Line 5: @@
 == Introduction ==
-This script allows you to color two structures by distance displacement between an Open and Closed form of a protein, as calculated by PyMol's internal distance command. The pairwise distance is calculated between, C-alpha or all-atoms. The distance displacement values are stored as B-factors of these residues, which are colored by a ''rainbow'' color spectrum, with blue specifying minimum  and red indicating maximum.
+This script allows you to color two structures by distance displacement between an Open and Closed form of a protein, as calculated by PyMol's internal distance command. The pairwise distance is calculated between all-atoms. The distance displacement values are stored as B-factors of these residues, which are colored by a ''rainbow'' color spectrum, with blue specifying minimum  and red indicating maximum.
 == Code ==
 Do keep in mind, all original B-factors values are overwritten!
-There exist two versions. <br>
+There exist one version. <br>
 ColorByDisplacement'''All''' is between All atoms in residues and is quite slow => 3-5 mins for a run. Ideal for sticks representation.