ColorByDisplacement - Revision history

Pyadmin: 9 revisions

2014-03-28T02:15:05Z

9 revisions

2011-12-01T14:08:51Z

2011-12-01T14:08:33Z

2011-12-01T14:07:32Z

2011-12-01T14:07:21Z

2011-12-01T14:06:46Z

2011-08-21T12:21:24Z

Acknowledgement

2011-01-13T12:17:18Z

Introduction

2011-01-07T07:56:07Z

Code

2011-01-07T07:55:02Z

Bug in code

← Older revision		Revision as of 14:08, 1 December 2011
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	#REDIRECT [[colorbydisplacement]]		#REDIRECT [[colorbydisplacement]]
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−	~~[[Category:Script_Library]]~~
−	~~[[Category:Structural_Biology_Scripts]]~~

← Older revision		Revision as of 14:08, 1 December 2011
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	#REDIRECT [[colorbydisplacement]]		#REDIRECT [[colorbydisplacement]]
		+
		+	[[Category:Script_Library]]
		+	[[Category:Structural_Biology_Scripts]]

← Older revision		Revision as of 14:07, 1 December 2011
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	#REDIRECT [[colorbydisplacement]]		#REDIRECT [[colorbydisplacement]]
−
−	~~[[Category:Script_Library]]~~
−	~~[[Category:Structural_Biology_Scripts]]~~

← Older revision		Revision as of 14:06, 1 December 2011
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		+	#REDIRECT [[colorbydisplacement]]
	== Acknowledgement ==		== Acknowledgement ==
	This pymol script is made by Troels Emtekær Linnet.		This pymol script is made by Troels Emtekær Linnet.

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 == Acknowledgement ==
-This script is based on the scaffold from [[ColorByRMSD]]. Peace love and harmomy goes to Shivender Shandilya and Jason Vertrees.
+This pymol script is made by Troels Emtekær Linnet.
 == Introduction ==

← Older revision	Revision as of 02:15, 28 March 2014
(No difference)

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 == Introduction ==
-This script allows you to color two structures by distance displacement between a Open and Closed form of a protein, as calculated by PyMol's internal distance command. The pairwise distance is calculated between, C-alpha or all-atoms. The distance displacement values are stored as B-factors of these residues, which are colored by a ''rainbow'' color spectrum, with blue specifying minimum  and red indicating maximum.
+This script allows you to color two structures by distance displacement between an Open and Closed form of a protein, as calculated by PyMol's internal distance command. The pairwise distance is calculated between, C-alpha or all-atoms. The distance displacement values are stored as B-factors of these residues, which are colored by a ''rainbow'' color spectrum, with blue specifying minimum  and red indicating maximum.
 == Code ==

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 There exist two versions. <br>
-ColorByDisplacementCA is quick and is between CA atoms. Ideal for helices representation. <br>
+ColorByDisplacement'''CA''' is quick and is between CA atoms. Ideal for helices representation. <br>
-ColorByDisplacementAll is between All atoms in residues and is quite slow => 3-5 mins for a run. Ideal for sticks representation.
+ColorByDisplacement'''All''' is between All atoms in residues and is quite slow => 3-5 mins for a run. Ideal for sticks representation.
 '''You have to specify which residues should be used in the alignment procedure, or it will take all residues as standard'''

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 A bug in the boolean operator of the spectrum command has been found. This versions work for version 1.3 Educational product. <br>
 For other versions of pymol, try to change (comment/uncomment) the '''cmd.spectrum''' line.
 === Examples ===