Color - Revision history

Cchem: 1 revision

2019-11-24T02:11:53Z

1 revision

2019-10-24T16:21:01Z

arguments

2016-03-07T03:47:32Z

5 revisions

2016-03-02T21:13:17Z

2016-03-02T21:12:26Z

What colors does PyMOL currently have?

2016-03-02T21:11:21Z

What colors does PyMOL currently have?

2016-03-02T21:09:38Z

What colors does PyMOL currently have?

2014-06-10T12:40:16Z

Getting Atom Colors: added hint to colors menu and script

2014-03-28T01:43:25Z

34 revisions

2013-05-28T14:46:16Z

Reassigning B-Factors and Coloring - from file

@@ Line 1: / Line 1: @@
-'''color''' sets the color of an object or an atom selection to a predefined, named color. For an overview of predifined colors, see [[Color Values]]. For a script that enumerates all the colors see, [[List_Colors]]. If you want to define your own colors, see [[Set_Color]].
+'''color''' sets the color of an object or an atom selection to a predefined, named color, an RGB hex color, or a color [[ramp_new|ramp]].
-===USAGE===
+For an overview of predefined colors, see [[Color Values]].
 <source lang="python">
 color color-name
@@ Line 7: / Line 12: @@
 </source>
-===PYMOL API===
+== Arguments ==
-<source lang="python">cmd.color( string color, string selection )</source>
 ===Color all carbons yellow===
 <source lang="python">color yellow, (name C*)</source>
 ===Color by Spectrum Example===
@@ Line 160: / Line 177: @@
 </source>
-== SEE ALSO ==
+== See Also ==
 * [[Advanced Coloring]]

@@ Line 163: / Line 163: @@
 * [[Advanced Coloring]]
 * [[spectrum]]
 * [[Ramp_New]]

@@ Line 130: / Line 130: @@
 === What colors does PyMOL currently have? ===
 basic colors can be manually accessed and edited from the PyMOL menu under '''Setting''' --> '''Colors...'''<br>
-You can use the [[Get Color Indices]] to get a list of Pymols named colors.<br>
+At the Pymol prompt, you can use the command [[Get Color Indices]] to get a list of Pymols named colors.<br>
 [[Get_colors]] is a script that allows accessing colors as well.<br>

@@ Line 130: / Line 130: @@
 === What colors does PyMOL currently have? ===
 basic colors can be manually accessed and edited from the PyMOL menu under '''Setting''' --> '''Colors...'''<br>
-[[Get_colors]] is a script that allows accessing colors
+You can use the [[Get Color Indices]] to get a list of Pymols named colors.<br>
-You can use the [[Get Color Indices]] to get a list of Pymols named colors.
+[[Get_colors]] is a script that allows accessing colors as well.<br>
 === Color States Individually ===

@@ Line 131: / Line 131: @@
 basic colors can be manually accessed and edited from the PyMOL menu under '''Setting''' --> '''Colors...'''<br>
 [[Get_colors]] is a script that allows accessing colors
 === Color States Individually ===

← Older revision	Revision as of 02:11, 24 November 2019
(No difference)

← Older revision	Revision as of 03:47, 7 March 2016
(No difference)

← Older revision	Revision as of 01:43, 28 March 2014
(No difference)

@@ Line 98: / Line 98: @@
 maxval = max(val_list)
 print maxval
-cmd.spectrum("b", "blue_white_red", "%s and n. CA"%prot, minimum=minval, maximum=maxval)
+cmd.spectrum("b", "blue_white_red", "%s and n. CA"%prot, minimum=0, maximum=maxval)
 cmd.save("%s_newBFactors.pdb"%prot, "%s"%prot)
 </source>