Caver - Revision history

Cchem: 1 revision

2017-08-28T01:14:32Z

1 revision

Speleo3: caver3

2017-07-27T21:48:04Z

caver3

Pyadmin: 11 revisions

2014-03-28T01:42:57Z

11 revisions

Tlinnet: Redirected page to Caver2

2011-12-11T00:02:42Z

Redirected page to Caver2

Hci at 08:08, 9 November 2010

2010-11-09T08:08:07Z

Hci at 08:07, 9 November 2010

2010-11-09T08:07:07Z

Hci at 08:05, 9 November 2010

2010-11-09T08:05:56Z

Hci at 08:00, 9 November 2010

2010-11-09T08:00:44Z

Hci at 07:38, 9 November 2010

2010-11-09T07:38:20Z

Cank at 20:29, 26 February 2009

2009-02-26T20:29:02Z

New page

[http://loschmidt.chemi.muni.cz/caver/index.php CAVER] provides rapid, accurate and fully automated calculation of pathways leading from buried cavities to outside solvent in static and dynamic protein structures. Study of these pathways is important in drug design and molecular enzymology to understand binding of inhibitors to the receptors, substrate binding and product egress from the enzyme active sites. Calculated pathways can be visualized by graphic program PyMol dissecting anatomy and dynamics of entrance tunnels. CAVER allows analysis of any molecular structure including proteins, nucleic acids, inorganic materials, etc.

References:

Petřek M., Otyepka M., Banáš P., Košinová P., Koča J. and Damborský J., [http://loschmidt.chemi.muni.cz/peg/abstracts/bmcbioinf06.html CAVER: A New Tool to Explore Routes from Protein Clefts, Pockets and Cavities], BMC Bioinformatics 2006, 7: 316

Damborský J., Petřek M., Banáš P., Otyepka M., [http://loschmidt.chemi.muni.cz/peg/abstracts/btj07a.html Identification of Tunnels in Proteins, Nucleic Acids, Inorganic Materials and Molecular Ensembles], Biotechnology Journal 2007, 2: 62-67

[[Image:Caver.png]]

[[Category:Surfaces and Voids|Caver]]
[[Category:Nucleic_Acids|Caver]]
[[Category:Biochemical_Properties]]
[[Category:Plugins]]

← Older revision		Revision as of 21:48, 27 July 2017
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−	#REDIRECT [[~~caver2~~]]	+	#REDIRECT [[caver3]]

	A new version, CAVER 2.0, was recently developed. For further information see [http://www.pymolwiki.org/index.php/CAVER_2.0 CAVER 2.0 PyMOLWiki page]		A new version, CAVER 2.0, was recently developed. For further information see [http://www.pymolwiki.org/index.php/CAVER_2.0 CAVER 2.0 PyMOLWiki page]

← Older revision		Revision as of 00:02, 11 December 2011
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		+	#REDIRECT [[caver2]]
		+
	A new version, CAVER 2.0, was recently developed. For further information see [http://www.pymolwiki.org/index.php/CAVER_2.0 CAVER 2.0 PyMOLWiki page]		A new version, CAVER 2.0, was recently developed. For further information see [http://www.pymolwiki.org/index.php/CAVER_2.0 CAVER 2.0 PyMOLWiki page]

← Older revision		Revision as of 08:08, 9 November 2010
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−	A new version, CAVER 2.0, was recently developed. For further information see [http://www.pymolwiki.org/index.php/CAVER_2.0:CAVER 2.0 PyMOLWiki page]	+	A new version, CAVER 2.0, was recently developed. For further information see [http://www.pymolwiki.org/index.php/CAVER_2.0 CAVER 2.0 PyMOLWiki page]

← Older revision		Revision as of 08:07, 9 November 2010
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−	A new version, CAVER 2.0, was recently developed. For further information see [[http://www.pymolwiki.org/index.php/CAVER_2.0]]	+	A new version, CAVER 2.0, was recently developed. For further information see [http://www.pymolwiki.org/index.php/CAVER_2.0:CAVER 2.0 PyMOLWiki page]

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-[[http://www.pymolwiki.org/index.php/CAVER_2.0]]
+A new version, CAVER 2.0, was recently developed. For further information see [[http://www.pymolwiki.org/index.php/CAVER_2.0]]
 CAVER 1.0 provides rapid, accurate and fully automated calculation of pathways leading from buried cavities to outside solvent in static and dynamic protein structures. Study of these pathways is important in drug design and molecular enzymology to understand binding of inhibitors to the receptors, substrate binding and product egress from the enzyme active sites. Calculated pathways can be visualized by graphic program PyMol dissecting anatomy and dynamics of entrance tunnels. CAVER allows analysis of any molecular structure including proteins, nucleic acids, inorganic materials, etc.
 References:

← Older revision	Revision as of 01:14, 28 August 2017
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← Older revision	Revision as of 01:42, 28 March 2014
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← Older revision		Revision as of 08:00, 9 November 2010
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		+	[[http://www.pymolwiki.org/index.php/CAVER_2.0]]
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	CAVER 1.0 provides rapid, accurate and fully automated calculation of pathways leading from buried cavities to outside solvent in static and dynamic protein structures. Study of these pathways is important in drug design and molecular enzymology to understand binding of inhibitors to the receptors, substrate binding and product egress from the enzyme active sites. Calculated pathways can be visualized by graphic program PyMol dissecting anatomy and dynamics of entrance tunnels. CAVER allows analysis of any molecular structure including proteins, nucleic acids, inorganic materials, etc.		CAVER 1.0 provides rapid, accurate and fully automated calculation of pathways leading from buried cavities to outside solvent in static and dynamic protein structures. Study of these pathways is important in drug design and molecular enzymology to understand binding of inhibitors to the receptors, substrate binding and product egress from the enzyme active sites. Calculated pathways can be visualized by graphic program PyMol dissecting anatomy and dynamics of entrance tunnels. CAVER allows analysis of any molecular structure including proteins, nucleic acids, inorganic materials, etc.

← Older revision		Revision as of 07:38, 9 November 2010
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−	~~[http://loschmidt~~.~~chemi.muni.cz/caver/index.php CAVER]~~ provides rapid, accurate and fully automated calculation of pathways leading from buried cavities to outside solvent in static and dynamic protein structures. Study of these pathways is important in drug design and molecular enzymology to understand binding of inhibitors to the receptors, substrate binding and product egress from the enzyme active sites. Calculated pathways can be visualized by graphic program PyMol dissecting anatomy and dynamics of entrance tunnels. CAVER allows analysis of any molecular structure including proteins, nucleic acids, inorganic materials, etc.	+	CAVER 1.0 provides rapid, accurate and fully automated calculation of pathways leading from buried cavities to outside solvent in static and dynamic protein structures. Study of these pathways is important in drug design and molecular enzymology to understand binding of inhibitors to the receptors, substrate binding and product egress from the enzyme active sites. Calculated pathways can be visualized by graphic program PyMol dissecting anatomy and dynamics of entrance tunnels. CAVER allows analysis of any molecular structure including proteins, nucleic acids, inorganic materials, etc.

	References:		References: