https://wiki.pymol.org/index.php?action=history&feed=atom&title=CCTBX-fedora32 2026-05-10T12:01:02Z Revision history for this page on the wiki MediaWiki 1.35.1 https://wiki.pymol.org/index.php?title=CCTBX-fedora32&diff=14780&oldid=prev 2020-09-14T02:13:13Z

<p>1 revision</p> <p><b>New page</b></p><div><br /> ''' This page describes how to use the Computational Crystallography Toolbox (cctbx) with open-source PyMOL on Fedora 32 which has python3 only installed. '''<br /> <br /> ----<br /> <br /> <br /> CCTBX and PyMOL need to be compiled with the same Python distribution, otherwise they won't be compatible.<br /> <br /> <br /> Confirmed procedure to get this working on Linux Fedora 32 with PyQt5 and CCTBX build dev-2130, which is based on conda:<br /> <br /> <br /> 1. Download cctbx from http://cci.lbl.gov/cctbx_build<br /> <br /> 2. Install cctbx: <br /> ./install --prefix=/usr/local<br /> <br /> <br /> 3. Install latest Miniconda3 in /usr/local from https://repo.anaconda.com/miniconda<br /> <br /> 4. Install pymol dependencies with conda into the cctbx environment:<br /> <br /> /usr/local/miniconda3/bin/conda install -p /usr/local/cctbx-dev-2130/conda_base -c conda-forge glew freeglut libpng freetype libxml2 msgpack-c pyqt qt glm qt catch2 libnetcdf<br /> <br /> 5. Download mmtf-cpp from https://github.com/rcsb/mmtf-cpp and copy the content of the include subdirectory to /usr/local/cctbx-dev-2130/conda_base/include<br /> <br /> 6. Activate cctbx: <br /> source /usr/local/cctbx-dev-2130/cctbx_env.csh<br /> <br /> <br /> 7. Compile PyMOL with: <br /> cctbx.python setup.py install<br /> <br /> <br /> 8. Install Pmw from https://github.com/schrodinger/pmw-patched with: <br /> cctbx.python setup.py install<br /> <br /> <br /> 9. Run PyMOL with: <br /> cctbx.python -m pymol</div>

Cchem https://wiki.pymol.org/index.php?title=CCTBX-fedora32&diff=14754&oldid=prev 2020-06-22T05:01:40Z

<p>1 revision</p> <p><b>New page</b></p><div><br /> ''' This page describes how to use the Computational Crystallography Toolbox (cctbx) with open-source PyMOL on Fedora 32 which has python3 only installed. '''<br /> <br /> ----<br /> <br /> <br /> CCTBX and PyMOL need to be compiled with the same Python distribution, otherwise they won't be compatible.<br /> <br /> <br /> Confirmed procedure to get this working on Linux Fedora 32 with PyQt5 and CCTBX build dev-2130, which is based on conda:<br /> <br /> <br /> 1. Download cctbx from http://cci.lbl.gov/cctbx_build<br /> <br /> 2. Install cctbx: <br /> ./install --prefix=/usr/local<br /> <br /> <br /> 3. Install latest Miniconda3 in /usr/local from https://repo.anaconda.com/miniconda<br /> <br /> 4. Install pymol dependencies with conda into the cctbx environment:<br /> <br /> /usr/local/miniconda3/bin/conda install -p /usr/local/cctbx-dev-2130/conda_base -c conda-forge glew freeglut libpng freetype libxml2 msgpack-c pyqt qt glm catch2 libnetcdf<br /> <br /> 5. Download mmtf-cpp from https://github.com/rcsb/mmtf-cpp and copy the content of the include subdirectory to /usr/local/cctbx-dev-2130/conda_base/include<br /> <br /> 6. Activate cctbx: <br /> source /usr/local/cctbx-dev-2130/cctbx_env.csh<br /> <br /> <br /> 7. Compile PyMOL with: <br /> cctbx.python setup.py install<br /> <br /> <br /> 8. Install Pmw from https://github.com/schrodinger/pmw-patched with: <br /> cctbx.python setup.py install<br /> <br /> <br /> 9. Run PyMOL with: <br /> cctbx.python -m pymol</div>

Cchem https://wiki.pymol.org/index.php?title=CCTBX-fedora32&diff=14740&oldid=prev 2020-05-26T05:13:07Z

<p>22 revisions</p> <p><b>New page</b></p><div><br /> ''' This page describes how to use the Computational Crystallography Toolbox (cctbx) with open-source PyMOL on Fedora 32 which has python3 only installed. '''<br /> <br /> ----<br /> <br /> <br /> CCTBX and PyMOL need to be compiled with the same Python distribution, otherwise they won't be compatible.<br /> <br /> <br /> Confirmed procedure to get this working on Linux Fedora 32 with PyQt5 and CCTBX build dev-2130, which is based on conda:<br /> <br /> <br /> 1. Download cctbx from http://cci.lbl.gov/cctbx_build<br /> <br /> 2. Install cctbx: <br /> ./install --prefix=/usr/local<br /> <br /> <br /> 3. Install latest Miniconda3 in /usr/local from https://repo.anaconda.com/miniconda<br /> <br /> 4. Install pymol dependencies with conda into the cctbx environment:<br /> <br /> /usr/local/miniconda3/bin/conda install -p /usr/local/cctbx-dev-2130/conda_base -c conda-forge glew freeglut libpng freetype libxml2 msgpack-c pyqt glm catch2 libnetcdf<br /> <br /> 5. Download mmtf-cpp from https://github.com/rcsb/mmtf-cpp and copy the content of the include subdirectory to /usr/local/cctbx-dev-2130/conda_base/include<br /> <br /> 6. Activate cctbx: <br /> source /usr/local/cctbx-dev-2130/cctbx_env.csh<br /> <br /> <br /> 7. Compile PyMOL with: <br /> cctbx.python setup.py install<br /> <br /> <br /> 8. Install Pmw from https://github.com/schrodinger/pmw-patched with: <br /> cctbx.python setup.py install<br /> <br /> <br /> 9. Run PyMOL with: <br /> cctbx.python -m pymol</div>

Cchem