CCTBX - Revision history

Cchem: 1 revision

2020-12-07T04:05:31Z

1 revision

2020-09-24T09:22:17Z

conda-forge::cctbx-base

2020-05-26T05:13:06Z

1 revision

2020-05-11T19:59:11Z

CCTBX-fedora32

2019-04-29T03:23:31Z

1 revision

2019-04-02T09:20:36Z

Windows

2019-04-01T03:11:56Z

1 revision

2019-03-29T16:02:16Z

Incentive PyMOL with dev-1723

2019-02-04T04:20:39Z

3 revisions

2019-01-30T16:56:51Z

intro

@@ Line 5: / Line 5: @@
 === Incentive PyMOL ===
-Using cctbx with Incentive PyMOL 2.x should become easier once the cctbx project provides conda packages.
+Create a [https://repo.continuum.io/miniconda/ conda] environment with [https://anaconda.org/schrodinger/pymol schrodinger::pymol] and [https://anaconda.org/conda-forge/cctbx-base conda-forge::cctbx-base].
-==== Linux ====
+On Linux and Windows:
-Confirmed procedure to get this working on Linux with CCTBX build '''dev-1723''', which is based on conda:
+<syntaxhighlight lang="bash">conda create -n env1 schrodinger::pymol conda-forge::cctbx-base</syntaxhighlight>
-# Download cctbx from http://cci.lbl.gov/cctbx_build/
+On macOS, you also need [https://anaconda.org/schrodinger/pymol schrodinger::tk] and [https://www.xquartz.org/ XQuartz]:
-==== Windows ====
+<syntaxhighlight lang="bash">conda create -n env1 schrodinger::pymol conda-forge::cctbx-base schrodinger::tk</syntaxhighlight>
 === Open-Source PyMOL ===

@@ Line 32: / Line 32: @@
 === Open-Source PyMOL ===
-Confirmed procedure to get this working on Linux: Compile PyMOL with <code>cctbx.python</code>
+See [[CCTBX-fedora32]].
 [[Category:PyMol_Integration|cctbx]]

@@ Line 7: / Line 7: @@
 Using cctbx with Incentive PyMOL 2.x should become easier once the cctbx project provides conda packages.
 See https://github.com/cctbx/cctbx_project/issues/9
 Confirmed procedure to get this working on Linux with CCTBX build '''dev-1723''', which is based on conda:
@@ Line 15: / Line 17: @@
 # Install '''pymol''' with '''conda''' into the '''cctbx environment''':<syntaxhighlight lang="bash">$HOME/miniconda3/bin/conda install -p $HOME/local/cctbx-dev-1723/conda_base -c schrodinger -c conda-forge pymol</syntaxhighlight>
 # Activate cctbx: <code>source $HOME/local/cctbx-dev-1723/cctbx_env.sh</code>
 # Run PyMOL with: <code>cctbx.python -m pymol</code>

@@ Line 5: / Line 5: @@
 === Incentive PyMOL ===
-Using cctbx with Incentive PyMOL 2.x should be possible once the cctbx project provides conda packages.
+Using cctbx with Incentive PyMOL 2.x should become easier once the cctbx project provides conda packages.
 See https://github.com/cctbx/cctbx_project/issues/9
 === Open-Source PyMOL ===

← Older revision		Revision as of 16:56, 30 January 2019
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−	~~=Computational Crystallography Toolbox=~~	+	This page describes how to use the [https://github.com/cctbx/cctbx_project Computational Crystallography Toolbox (cctbx)] with PyMOL.
−
−	https://github.com/cctbx/cctbx_project
−
−	~~==Using With PyMol==~~

	cctbx and PyMOL need to be compiled with the same Python distribution, otherwise they won't be compatible.		cctbx and PyMOL need to be compiled with the same Python distribution, otherwise they won't be compatible.

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