https://wiki.pymol.org/index.php?action=history&feed=atom&title=B2transparency
B2transparency - Revision history
2026-06-26T13:55:28Z
Revision history for this page on the wiki
MediaWiki 1.35.1
https://wiki.pymol.org/index.php?title=B2transparency&diff=837&oldid=prev
Pyadmin: 2 revisions
2014-03-28T01:06:23Z
<p>2 revisions</p>
<p><b>New page</b></p><div>{{Infobox script-repo<br />
|type = module<br />
|filename = b2transparency.py<br />
|author = [[User:Speleo3|Thomas Holder]]<br />
|license = BSD-2-Clause<br />
}}<br />
<br />
[[b2transparency]] can set transparency settings like [[transparency]] or [[sphere_transparency]] for each atom scaled by b-factor (or any other numeric atomic property).<br />
<br />
[[Image:b2.png|300px]]<br />
<br />
== Usage ==<br />
<br />
b2transparency [ selection [, setting [, minimum [, maximum [, var ]]]]]<br />
<br />
== Example ==<br />
<br />
<syntaxhighlight lang="python"><br />
# some dummy molecule with increasing b-factor along the chain<br />
fab AAAAAAAAAAAAA<br />
alter all, b=resv<br />
<br />
b2transparency all<br />
<br />
as sticks<br />
show surface<br />
<br />
set surface_color, gray<br />
</syntaxhighlight><br />
<br />
== See Also ==<br />
<br />
* [[spectrum]]<br />
<br />
[[Category:Script_Library]]<br />
[[Category:Pymol-script-repo]]</div>
Pyadmin
https://wiki.pymol.org/index.php?title=B2transparency&diff=835&oldid=prev
Speleo3: created
2012-05-10T14:31:47Z
<p>created</p>
<p><b>New page</b></p><div>{{Infobox script-repo<br />
|type = module<br />
|filename = b2transparency.py<br />
|author = [[User:Speleo3|Thomas Holder]]<br />
|license = BSD-2-Clause<br />
}}<br />
<br />
[[b2transparency]] can set transparency settings like [[transparency]] or [[sphere_transparency]] for each atom scaled by b-factor (or any other numeric atomic property).<br />
<br />
== Usage ==<br />
<br />
b2transparency [ selection [, setting [, minimum [, maximum [, var ]]]]]<br />
<br />
== Example ==<br />
<br />
<syntaxhighlight lang="python"><br />
# some dummy molecule with increasing b-factor along the chain<br />
fab AAAAAAAAAAAAA<br />
alter all, b=resv<br />
<br />
b2transparency all<br />
<br />
as sticks<br />
show surface<br />
<br />
set surface_color, gray<br />
</syntaxhighlight><br />
<br />
== See Also ==<br />
<br />
* [[spectrum]]<br />
<br />
[[Category:Script_Library]]<br />
[[Category:Pymol-script-repo]]</div>
Speleo3