Annocryst - Revision history

Cchem: 1 revision

2017-02-06T03:04:49Z

1 revision

2017-01-30T21:56:29Z

fix broken links

2014-03-28T01:48:52Z

11 revisions

2012-01-15T15:11:48Z

2011-12-11T21:56:22Z

Python Code

2011-12-11T21:55:29Z

2011-12-06T01:49:21Z

Example Pymol Script

2011-12-06T01:38:26Z

Example Pymol Script

2011-12-06T01:38:02Z

Example Pymol Script

2011-12-06T01:17:25Z

Example Pymol Script

@@ Line 9: / Line 9: @@
 AnnoCryst for PyMOL extends the functionality of PyMOL to support collaborative annotation of 3D crystallographic models. It is implemented as a plugin to PyMOL that provides an interface to browse and create annotations on structures loaded from Protein Data Bank (PDB) files. The annotations are retrieved from and stored on an annotation server using the W3C's Annotea protocol.
-Website: [http://www.itee.uq.edu.au/~eresearch/annocryst-pymol.php AnnoyCryst] online.
+Website: [http://www.itee.uq.edu.au/eresearch/projects/annocryst-pymol AnnoyCryst] online.
 == Example Pymol Script ==
-See userguide http://itee.uq.edu.au/~eresearch/downloads/annocryst-pymol-user-guide.pdf
+See userguide http://www.itee.uq.edu.au/eresearch/downloads/annocryst-pymol-user-guide.pdf
 Standard settings of '''AnnoCryst Settings'''

← Older revision		Revision as of 21:56, 11 December 2011
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	Push Open.		Push Open.
−
−	~~== Python Code ==~~
−
−	~~{{Template:PymolScriptRepoDownload\|plugins/annocryst.py}}~~

	[[Category:Plugins]]		[[Category:Plugins]]

← Older revision		Revision as of 21:55, 11 December 2011
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		+	{{Infobox script-repo
		+	\|type = plugin
		+	\|filename = plugins/annocryst.py
		+	\|author = Anna Gerber
		+	\|license = -
		+	}}
		+
		+	== Introduction ==
	AnnoCryst for PyMOL extends the functionality of PyMOL to support collaborative annotation of 3D crystallographic models. It is implemented as a plugin to PyMOL that provides an interface to browse and create annotations on structures loaded from Protein Data Bank (PDB) files. The annotations are retrieved from and stored on an annotation server using the W3C's Annotea protocol.		AnnoCryst for PyMOL extends the functionality of PyMOL to support collaborative annotation of 3D crystallographic models. It is implemented as a plugin to PyMOL that provides an interface to browse and create annotations on structures loaded from Protein Data Bank (PDB) files. The annotations are retrieved from and stored on an annotation server using the W3C's Annotea protocol.

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 keywordOntologyNamespace: http://www.proteinontology.info/po.owl
 keywordOntologyURL: http://maenad.itee.uq.edu.au/agerber/po.owl
-pdbRepositoryURL:http://maenad.itee.uq.edu.au:8080/harvanapdb/au.edu.uq.itee.eresearch.harvana.gwt.Main/pdb/
+pdbRepositoryURL: http://maenad.itee.uq.edu.au:8080/harvanapdb/au.edu.uq.itee.eresearch.harvana.gwt.Main/pdb/
 uploadServerURL: http://maenad.itee.uq.edu.au:8080/Annotea/FileUploadServlet
 username: Anonymous
 </syntaxhighlight>
-View the settings, and save them.
+Change following settings, and save them.
 Then in the '''PyMOL command window''', write

← Older revision	Revision as of 03:04, 6 February 2017
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← Older revision	Revision as of 01:48, 28 March 2014
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    remotepdb 3ait
 In the '''Annocryst''', is now written: http://maenad.itee.uq.edu.au:8080/harvanapdb/au.edu.uq.itee.eresearch.harvana.gwt.Main/pdb/3ait.pdb
 == Python Code ==