All states - Revision history

Pyadmin: 10 revisions

2014-03-28T01:31:01Z

10 revisions

New page

==Overview==

When set "on", this setting causes PyMOL to display all states or in NMR jargon: all the models in the ensemble.
The 'default' behavior (OFF) can be overridden by placing the "set all_states, on" statement into your '.pymolrc' file, located in your login directory (under all flavors of unix).

==Syntax==
<source lang="python">
set all_states, on
set all_states, off
</source>
==Example==
<source lang="python">
# fetch a PDB and show it in multiple states; this one
# line does the work of the next 6 lines.
fetch 1nmr

# this is older code, use the above code which is newer
import urllib2
pdbCode = '1BRV'
pdbUrl = 'http://www.rcsb.org/pdb/downloadFile.do?fileFormat=pdb&compression=NO&structureId='+pdbCode
pdbFile = urllib2.urlopen(pdbUrl)
pdbContent = pdbFile.read()
cmd.read_pdbstr(pdbContent, pdbCode)

set all_states, on
</source>

This shows the effect of turning on/off the '''all_states''' setting used with the script above.
<gallery>
Image:All_states_on.png|set all_states, on
Image:All_states_off.png|set all_states, off
</gallery>

== User Notes ==
* There was an error with importing ensembles of ensembles files (complex MOL2 files) before revision 3541. If you experience this problem, update to 3541 or later.

== See Also ==
[[Split_States]]

[[Category:Settings|All states]]
[[Category:States]]

Jurgenfd: /* Example */

2006-09-14T21:26:00Z

Example

Jurgenfd at 20:28, 14 September 2006

2006-09-14T20:28:09Z

Jurgenfd: /* Example */

2006-09-14T20:26:33Z

Example

Jurgenfd at 20:05, 14 September 2006

2006-09-14T20:05:12Z

New page

@@ Line 10: / Line 10: @@
 ==Example==
-to be added: a read pdb model 1brv
+load 1brv.pdb # Get it locally first by e.g. using the Plugin: "PDB Loader Service"
 set all_states, on

@@ Line 11: / Line 11: @@
 ==Example==
 <source lang="python">
-load 1brv.pdb # Get it locally first by e.g. using the Plugin: "PDB Loader Service"
+import urllib2
 set all_states, on
 </source>