AAindex - Revision history

Cchem: 1 revision

2019-03-04T03:58:18Z

1 revision

2019-02-25T10:57:13Z

py3

2014-03-28T01:06:09Z

12 revisions

2012-01-15T14:43:32Z

2011-12-11T21:51:38Z

Python Code

2011-12-11T21:51:26Z

2011-12-11T09:29:12Z

2011-12-04T12:04:55Z

use Template:PymolScriptRepoDownload

2011-12-03T17:36:10Z

The Script

2011-07-01T09:49:30Z

@@ Line 28: / Line 28: @@
 aaindex.grep('volume')
 x = aaindex.get('KRIW790103')
-print x
+print(x)
-print x.get('A')
+print(x.get('A'))
 aaindex.grep('blosum')
 x = aaindex.get('HENS920102')
-print x.get('A', 'K')
+print(x.get('A', 'K'))
 </source>

← Older revision		Revision as of 14:43, 15 January 2012
Line 52:		Line 52:
	[[Category:Biochemical_Scripts]]		[[Category:Biochemical_Scripts]]
	[[Category:Structural_Biology_Scripts]]		[[Category:Structural_Biology_Scripts]]
		+	[[Category:Pymol-script-repo]]

@@ Line 44: / Line 44: @@
 show surface
 </source>
 == See Also ==

← Older revision		Revision as of 21:51, 11 December 2011
Line 1:		Line 1:
		+	{{Infobox script-repo
		+	\|type = script
		+	\|filename = aaindex.py
		+	\|author = [[User:Speleo3\|Thomas Holder]]
		+	\|license = BSD
		+	}}
		+
		+	== Introduction ==
	[[File:AAindexExample.png\|200px\|thumb\|right\|Hydrophobicity coloring with KYTJ820101]]		[[File:AAindexExample.png\|200px\|thumb\|right\|Hydrophobicity coloring with KYTJ820101]]

@@ Line 45: / Line 45: @@
 * Protscale from [http://www.rubor.de/pymol_extensions_de.html rTools] does a similar job in coloring by amino acid properties
 [[Category:Script_Library]]
 [[Category:Biochemical_Scripts]]
 [[Category:Structural_Biology_Scripts]]

← Older revision	Revision as of 03:58, 4 March 2019
(No difference)

← Older revision	Revision as of 01:06, 28 March 2014
(No difference)

@@ Line 38: / Line 38: @@
 == Python Code ==
-For a color coded view:
+{{Template:PymolScriptRepoDownload|aaindex.py}}
 == See Also ==

@@ Line 10: / Line 10: @@
 * pmf: Potential of Mean Force (aaindex3)
-= Python Example =
+== Python Example ==
 Consider the script is called aaindex.py, it is placed somewhere in your PYTHONPATH and the aaindex flatfiles are found in the current directory.
@@ Line 28: / Line 28: @@
 </source>
-= PyMOL Example =
+== PyMOL Example ==
 <source lang="python">
@@ Line 37: / Line 37: @@
 </source>
-= The Script =
+== The Script ==
 <source lang="python">
 '''
@@ Line 457: / Line 457: @@
 # vi: ts=4:sw=4:smarttab:expandtab
 </source>
 [[Category:Plugins]]