Stick radius

2009-09-02T06:00:27Z

Ykalidas: /* If the above commands do not work */

==Overview==
This setting affects the radius of sticks in the sticks representation. Default scale is set to 0.25.

In newer versions of PyMOL, one may set the [[Stick_radius]] on a per-bond basis. So, you can set for example, the radius of only selected bonds if you want. This is done through the [[Set_bond]] command.

<gallery>
Image:Stick_rad_0.05.png|stick_radius set to 0.05
Image:Stick_radius_default.png|stick_radius set to the default 0.25
Image:Stick_rad_0.85.png|stick_radius set to 0.85
</gallery>

==Syntax==
<source lang="python">
set_bond stick_radius, ''size'', selection
</source>
where,
*''size'' can be any float number. Using 0.25 (default value) is usually appropriate for most representations, although 0.15 migh be preferred for comparing closely related structures, e.g., conformers.

''Note:'' <source lang="python">set_bond stick_radius</source> by itself will revert to 1.00.
==If the above commands do not work==
You can do something like below
<source lang="python">

To set on the entire object

set stick_radius=0.12

OR

create myObj, <selection>

Ex : create myObj, hetatm

set stick_radius,0.2,myObj

</source>

==Related settings==
*[[Set_bond]]
*[[sphere_scale]]
*[[stick_ball_ratio]]

[[Category:Sticks]]
[[Category:Settings]]

Stick radius

2009-08-31T04:11:11Z

Ykalidas: /* Syntax */

==Overview==
This setting affects the radius of sticks in the sticks representation. Default scale is set to 0.25.

In newer versions of PyMOL, one may set the [[Stick_radius]] on a per-bond basis. So, you can set for example, the radius of only selected bonds if you want. This is done through the [[Set_bond]] command.

<gallery>
Image:Stick_rad_0.05.png|stick_radius set to 0.05
Image:Stick_radius_default.png|stick_radius set to the default 0.25
Image:Stick_rad_0.85.png|stick_radius set to 0.85
</gallery>

==Syntax==
<source lang="python">
set_bond stick_radius, ''size'', selection
</source>
where,
*''size'' can be any float number. Using 0.25 (default value) is usually appropriate for most representations, although 0.15 migh be preferred for comparing closely related structures, e.g., conformers.

''Note:'' <source lang="python">set_bond stick_radius</source> by itself will revert to 1.00.
==If the above commands do not work==
You can do something like below
<source lang="python">
set stick_radius=0.12
</source>

==Related settings==
*[[Set_bond]]
*[[sphere_scale]]
*[[stick_ball_ratio]]

[[Category:Sticks]]
[[Category:Settings]]

PyMOL Wiki - User contributions [en]

Stick radius

Stick radius