https://wiki.pymol.org/api.php?action=feedcontributions&feedformat=atom&user=Protoconid 2026-04-25T10:35:24Z User contributions MediaWiki 1.35.1 https://wiki.pymol.org/index.php?title=Category_talk:Script_Library&diff=4133 2009-10-28T15:19:03Z

<p>Protoconid: /*Instruction request*/</p> <hr /> <div>= Requests =<br /> Please place your PyMOL script requests here. A few other people might have the same request and someone might just code it up for free (viz. all these other scripts). There are no guarantees that someone will write your script, but it doesn't hurt asking.<br /> <br /> '''ExampleScriptTitle'''<br /> :: Example text of what the new awesome script is supposed to do in PyMOL. Consider posting some contact information, so once the script is posted you are apprised.<br /> <br /> <br /> ==Instruction request==<br /> Would it be possible to add short instructions to category page for new users how to run scripts in pymol...(?)<br /> <br /> = Policy =<br /> == Rules ==<br /> We want the script library to be as valuable as possible to the public. Therefore, please follow these rules when posting code to the wiki:<br /> * Only post code if you have the legal right to do so<br /> * All posted code must be released under some [http://www.opensource.org/licenses|open source license] or freer (public domain).<br /> ** Authors may maintain copyright<br /> ** Only post links to code that is not open source licensed, do not copy it onto the wiki<br /> <br /> == Depositing Scripts ==<br /> * Create a new page for your script<br /> * Please provide<br /> ** an overview of what the script does<br /> ** any usage comments or hints<br /> ** the source code<br /> * Please add the following to the bottom of your new page:&lt;br&gt;&lt;nowiki&gt;[[Category:Script_Library]]<br /> [[Category:PUT_SUBCATEGORY_NAME_HERE]]&lt;/nowiki&gt;<br /> <br /> <br /> = General Notes =<br /> == Notes ==<br /> * Feel free to add scripts (see [[#Rules|rules]] below).<br /> * Feel free to add new categories<br /> * You can make script requests on this page's discussion page<br /> * [http://github.com/jlec/Pymol-script-repo GIT Repository] of all our scripts: &lt;source lang=&quot;python&quot;&gt;git clone git://github.com/jlec/Pymol-script-repo.git&lt;/source&gt;<br /> <br /> == GitHub for Pymol-scripts==<br /> I created a github for the pymol scripts. I think this is a good way to to collect and enlarge the collection of scripts. The repo is public accessible so contribute. If you need help on git just write me an email.<br /> <br /> http://github.com/jlec/Pymol-script-repo</div>

Protoconid https://wiki.pymol.org/index.php?title=Talk:CreateSecondaryStructure&diff=45 2009-10-28T15:07:40Z

<p>Protoconid: guidance</p> <hr /> <div>Can there be a clear English explanation of what is happening with this script and how to execute it for the less Python literate please??<br /> :Download the script and preferably save it in ''*.pml'' format to the same folder from which you are running pymol. You can then run the script by typing to pymol command input area<br /> run myscript.pml<br /> :If one wants to create custom peptide sequences I recommend one to use scripts made by Robert Campbell (see [[Peptide_Sequence#Other_Sources|Peptide Sequence:Other Sources]]) --[[User:Protoconid|Protoconid]] 15:07, 28 October 2009 (UTC)</div>

Protoconid