PyMOL Wiki - User contributions [en]

Talk:CheatSheet

2011-05-02T08:10:52Z

Pansanel: /* Conversion command */

This appears to be LaTeX. Can someone post a copy or link to the .tex source file so that we can update it when necessary?

I have the source. I'll have to ask for permission to post the source. I got permission to post the PDF, but hold the source and edit it as needed.
[[User:Inchoate|Tree]] 12:58, 12 March 2008 (CDT)

I think that the syntax for "zoom" is wrong. Shouldn't it be 'zoom mol' rather than 'zoom, mol' ? --[[User:Aplested|Aplested]] 12:47, 10 April 2008 (CDT)

== Correct ==

Yeah, you're right. It should be "zoom obj". The source is up there, you're welcome to fix it and the PDF. :-)

== Conversion command ==

Here are the command to generate the PDF from tex :
<pre>
latex pymolRef.tex
dvi2ps -tletter -tlandscape pymolRef.dvi
ps2pdf pymolRef.ps
</pre>

Talk:CheatSheet

2011-05-02T08:05:36Z

Pansanel:

This appears to be LaTeX. Can someone post a copy or link to the .tex source file so that we can update it when necessary?

I have the source. I'll have to ask for permission to post the source. I got permission to post the PDF, but hold the source and edit it as needed.
[[User:Inchoate|Tree]] 12:58, 12 March 2008 (CDT)

I think that the syntax for "zoom" is wrong. Shouldn't it be 'zoom mol' rather than 'zoom, mol' ? --[[User:Aplested|Aplested]] 12:47, 10 April 2008 (CDT)

== Correct ==

Yeah, you're right. It should be "zoom obj". The source is up there, you're welcome to fix it and the PDF. :-)

== Conversion command ==

Here are the command to generate the PDF from tex :
latex pymolRef.tex
dvi2ps -tletter -tlandscape pymolRef.dvi # US Letter format
dvi2ps -ta4 -tlandscape pymolRef.dvi # A4 format
ps2pdf pymolRef.ps

PDB Loader Service

2006-04-13T08:49:47Z

Pansanel:

==Description==
Originally bundled with PyMol 0.96, the PDB Loader Service plugin dynamically downloads a requested PDB from [http://www.rcsb.org/pdb/ RCSB] and displays it in PyMol.
==Comments==
Although the plugin is completely functional, I have written newer versions which never touch the filesystem and as a result are much cleaner. See the [[Tutorial on writing plugins]] for one such example.
==Author==
[[User:Cmoad|Charlie]] Moad

[[Category:Plugins]]
[[Category:Plugins_PDB]]

PDB Index Search

2006-04-13T08:49:20Z

Pansanel:

==Description==
This plugin has been developped for PyMol v0.97. It works also with v0.98 and v0.99. This piece of software has been tested successfully on Linux, Mac OS X and Microsoft Windows.
This plugin permits you to:
* search for any text into the PDB Index File ("Human Hemoglobin", i.e.)
* retrieve the results into a spreadsheet. By double clicking on the row, the structure of the entry is downloaded.

==Availability==
This plugin is Free Software and can be downloaded on this [http://pansanel.adlp.org/index.php?page=chemistry&sub_page=software website].

==Author==
[[User:Pansanel|Jerome Pansanel]]

[[Category:Plugins]]
[[Category:Plugins_PDB]]

Category:Plugins PDB

2006-04-12T15:08:59Z

Pansanel:

=== PDB ===
The [http://www.rcsb.org/pdb/ Protein Data Bank (PDB)] is a repository of large molecule structures (proteins and nucleic acids). The website offers also a variety of tools and resources for studying these structures. The structures are available in PDB and mmCIF format, that can be read by PyMOL. In order to exploit these resources, some plugins have been developped.

=== Plugin list ===

* [[PDB_Loader_Service|PDB Loader Service]]

* [[PDB_Index_Search|PDB Index Search]]

[[Category:Plugins]]

PDB Entry Search

2006-04-12T15:08:30Z

Pansanel: PDB Entry Search moved to PDB Index Search

#REDIRECT [[PDB Index Search]]

PDB Index Search

2006-04-12T15:08:06Z

Pansanel:

PDB Index Search

2006-04-12T14:38:38Z

Pansanel:

==Description==
This plugin has been developped for PyMol v0.97. It works also with v0.98 and v0.99. This piece of software has been tested successfully on Linux, Mac OS X and Microsoft Windows.
This plugin permits you to:
* search for any text into the PDB Entry File ("Human Hemoglobin", i.e.)
* retrieve the results into a spreadsheet. By double clicking on the row, the structure of the entry is downloaded.

==Availability==
This plugin is Free Software and can be downloaded on this [http://pansanel.adlp.org/index.php?page=chemistry&sub_page=software website].

==Author==
[[User:Pansanel|Jerome Pansanel]]

[[Category:Plugins]]

PDB Index Search

2006-04-12T14:36:15Z

Pansanel:

==Description==
This plugin has been developped for PyMol v0.97. It works also with v0.98 and v0.99. This piece of software has been tested successfully on Linux, Mac OS X and Microsoft Windows.
This plugin permits you to:
* search for any text into the PDB Entry File ("Human Hemoglobin", i.e.)
* retrieve the results into a spreadsheet. By double click on the row, the structure of the entry is downloaded.

==Availability==
This plugin is Free Software and can be downloaded on this [http://pansanel.adlp.org/index.php?page=chemistry&sub_page=software website].

==Author==
[[User:Pansanel|Jerome Pansanel]]

[[Category:Plugins]]

User:Pansanel

2006-04-12T14:31:17Z

Pansanel:

== My Work ==
Scientific Information System Manager at Aptanomics (Lyon, France)

== Links ==
http://www.alchem.org/ : Free Resources and Software for Chemistry

Category:Plugins PDB

2006-04-12T14:20:02Z

Pansanel:

=== PDB ===
The [http://www.rcsb.org/pdb/ Protein Data Bank (PDB)] is a repository of large molecule structures (proteins and nucleic acids). The website offers also a variety of tools and resources for studying these structures. The structures are available in PDB and mmCIF format, that can be read by PyMOL. In order to exploit these resources, some plugins have been developped.

=== Plugin list ===

* [[PDB_Loader_Service|PDB Loader Service]]

* [[PDB_Entry_Search|PDB Entry Search]]

[[Category:Plugins]]

Category:Plugins PDB

2006-04-12T08:04:46Z

Pansanel: