https://wiki.pymol.org/api.php?action=feedcontributions&feedformat=atom&user=Jgoldstone 2026-05-28T12:19:05Z User contributions MediaWiki 1.35.1 https://wiki.pymol.org/index.php?title=TCONCOORD&diff=10543 2010-01-08T19:19:22Z

<p>Jgoldstone: /* Installation */</p> <hr /> <div>== Description ==<br /> tCONCOORD is a program that predicts conformational flexibility based on geometrical considerations. The focus is on proteins, however, most non-protein residues like ligands or other organic compounds are treated correctly. You can use it for:<br /> <br /> 1) Generating ensembles of protein structures<br /> <br /> 2) Generating alternate conformations of protein parts (e. g. loops)<br /> <br /> 3) Generating ensembles of organic compounds.<br /> <br /> The PyMOL plugin helps to setup tCONCOORD runs and provides visual support for the structure analysis in tCONCOORD.<br /> <br /> == Installation ==<br /> <br /> 1) You need a working gromacs installation (ftp://ftp.gromacs.org/pub/gromacs/gromacs-3.3.3.tar.gz)<br /> <br /> 2) the tCONCOORD binaries (http://wwwuser.gwdg.de/~dseelig/tconcoord.html)<br /> <br /> 3) and the plugin itself (http://wwwuser.gwdg.de/~dseelig/cncplugin.html)<br /> <br /> == Author ==<br /> <br /> [[User:Dseelig|Daniel Seeliger]]<br /> <br /> [[Category:Plugins]]</div>

Jgoldstone https://wiki.pymol.org/index.php?title=Talk:Autodock_plugin&diff=31 2010-01-07T16:00:00Z

<p>Jgoldstone: </p> <hr /> <div>== Screenshots ==<br /> <br /> Daniel, nice plugin. FYI, PyMOLWiki pages see more action and downloads when they have images/screenshots of what is being offered. Just a hint.<br /> [[User:Inchoate|Tree]] 15:34, 18 September 2009 (UTC)<br /> <br /> == Problems with Windows version ==<br /> <br /> I'm having problems with the Windows version, using PyMol 1.2r1/MGLTools 1.5.4 on Windows XP. I can't generate receptors or generate flexible residues. [[User:Jgoldstone|Jgoldstone]] 16:00, 7 January 2010 (UTC)</div>

Jgoldstone