https://wiki.pymol.org/api.php?action=feedcontributions&feedformat=atom&user=FauxnPyMOL Wiki - User contributions [en]2026-08-02T20:03:18ZUser contributionsMediaWiki 1.35.1https://wiki.pymol.org/index.php?title=NsSNP_Loader&diff=8132NsSNP Loader2006-06-08T04:05:06Z<p>Fauxn: </p>
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<div>== Description ==<br />
This plugin allows the user to enter a SNP (rs) or a Swiss-Prot id and load the structural model from the large scale non-synonymous SNP database [http://alto.compbio.ucsf.edu/LS-SNP/ LS-SNP] if one exists. If more than one nsSNP is present for the chosen protein, all nsSNPs are listed and the user is able to choose which nsSNPs they wish to view. Once selected, the modeled structure is loaded, each residue is mutated to the nsSNP to allow easy comparison to the base structure.<br />
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== Comments ==<br />
As this plugin requires an internet connection it also requires the [[Proxy Config]] plugin.<br />
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== Download ==<br />
Download by right clicking the link and choosing 'Save Link As...'.<br><br />
[http://vbc.med.monash.edu.au/~fauxn/pymol_plugin/nsSNP_loader.py Download here]<br><br />
Then run PyMol and under the 'Plugin' menu option choose 'Install Plugin...'.<br />
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== Author ==<br />
[[User:Fauxn|Noel Faux]]<br />
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[[Category:Plugins]]</div>Fauxnhttps://wiki.pymol.org/index.php?title=Proxy_Config&diff=9855Proxy Config2006-06-08T04:04:38Z<p>Fauxn: </p>
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<div>== Description ==<br />
This plugin which stores the users internet setting, i.e. whether they connect directly to the internet or through a proxy.<br />
<br />
== Download ==<br />
Download by right clicking the link and choosing 'Save Link As...'.<br><br />
[http://vbc.med.monash.edu.au/~fauxn/pymol_plugin/ProxyConfig.py Download here]<br><br />
Then run PyMol and under the 'Plugin' menu option choose 'Install Plugin...'.<br />
<br />
== Author ==<br />
[[User:Fauxn|Noel Faux]]<br />
<br />
[[Category:Plugins]]</div>Fauxnhttps://wiki.pymol.org/index.php?title=User:Fauxn&diff=3024User:Fauxn2006-06-08T04:03:28Z<p>Fauxn: </p>
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<div>'''Noel Faux'''<br><br />
PhD Student<br><br />
Department of Biochemistry and Molecular Biology<br><br />
Monash University<br><br />
Clayton<br><br />
Victoria 3800<br><br />
web: [http://vbc.med.monash.edu.au/~fauxn home page]<br></div>Fauxnhttps://wiki.pymol.org/index.php?title=Main_Page&diff=4560Main Page2006-06-08T04:02:34Z<p>Fauxn: </p>
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<div><br><br />
* [[TOPTOC|'''Table of Contents''']]<br />
<br><br />
* [[Special:Allpages|Alphabetized Index of all pages]]<br />
<br><br />
<br />
== PyMol Wiki Home ==<br />
You have reached the home of the PyMolWiki, a user-driven web-oriented CMS.<br />
<br />
We provide<br />
* updates on [http://pymol.sf.net PyMol]<br />
* a stable user-oriented documentation base<br />
* a thorough treatment of the PyMol program<br />
* feature-rich scripts for general PyMol use<br />
<br />
== New Users ==<br />
The PyMol Wiki actively seeks new users and contributors! However, due to massive amount of spamming, we've changed the registration process, until further notice. '''If you would like access,''' you will need to be verified by a system administrator/sysop. To do so, email Jason dot Vertrees at gmail dot com (and tell me why you use PyMol). Also, be sure to include your '''desired user name''', '''real name''', '''temporary password''', and '''email address'''. Once we figure out a way to automatically prevent spamming, we'll return to the normal method of registration.<br />
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==News==<br />
===PyMol===<br />
* Two new [[:Category:Plugins|Plugins]] have been added, [[NsSNP Loader]] and [[Proxy Config]].<br />
* Added a page that lists all [[Settings|PyMol settings]]. We need to start documenting these.<br />
* Pymol 0.99 is out! Get it [http://delsci.com/rel/099/ here].<br />
* A new version of APBS plugin is available on [http://www-personal.umich.edu/~mlerner/PyMOL/ Michael Lerner's Page].<br />
* New [http://www.delsci.com/beta Beta Releases] available.<br />
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===Wiki===<br />
* [[MAC_Install]] page has been developed. It describes pymol and apbs issues specific to Mac OS X.<br />
* [[APBS]] page has been established. <br />
* [[APBS]] How to set this up on OS X and on Linux has been started but needs contributions.<br />
* New cool [[ray]] tracing features added!<br />
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===News Archive===<br />
*See our [[Older_News]].<br />
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== Links of Interest ==<br />
* [[TOPTOC|Top Level Table of Contents]]<br />
* [[:Category:FAQ|Frequently Asked Questions]] -- new!<br />
* [[PyMolWiki:Community_Portal| How to get involved!]] -- read me if you want to add something<br />
* [[:Category:Script Library| Script Library]] -- add one! (rTools info!)<br />
* [[:Category:Commands|PyMol Commands]] (>130 documented!)<br />
* [[:Special:Allpages| All Pages]]<br />
* [[:Category:Plugins|Plugins]]<br />
* [[:Special:Categories| See All Categories]]</div>Fauxnhttps://wiki.pymol.org/index.php?title=Plugin_nsSNP_Loader&diff=8160Plugin nsSNP Loader2006-06-08T01:18:13Z<p>Fauxn: Plugin nsSNP Loader moved to NsSNP Loader</p>
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<div>#REDIRECT [[NsSNP Loader]]</div>Fauxnhttps://wiki.pymol.org/index.php?title=Proxy_Config&diff=9854Proxy Config2006-06-08T01:17:48Z<p>Fauxn: </p>
<hr />
<div>== Description ==<br />
This plugin which stores the users internet setting, i.e. whether they connect directly to the internet or through a proxy.<br />
<br />
== Download ==<br />
Download by right clicking the link and choosing 'Save Link As...'.<br><br />
[[http://vbc.med.monash.edu.au/~fauxn/pymol_plugin/ProxyConfig.py Download here]]<br><br />
Then run PyMol and under the 'Plugin' menu option choose 'Install Plugin...'.<br />
<br />
== Author ==<br />
[[User:Fauxn|Noel Faux]]<br />
<br />
[[Category:Plugins]]</div>Fauxnhttps://wiki.pymol.org/index.php?title=User:Fauxn&diff=3023User:Fauxn2006-06-08T00:34:19Z<p>Fauxn: </p>
<hr />
<div>'''Noel Faux'''<br><br />
PhD Student<br><br />
Department of Biochemistry and Molecular Biology<br><br />
Monash University<br><br />
Clayton<br><br />
Victoria 3800<br><br />
web: [http://vbc.med.monash.edu.au/~fauxn home page]<br><br />
[[Plugin nsSNP Loader]]</div>Fauxnhttps://wiki.pymol.org/index.php?title=User:Fauxn&diff=3022User:Fauxn2006-06-08T00:22:09Z<p>Fauxn: </p>
<hr />
<div>'''Noel Faux'''<br><br />
PhD Student<br><br />
Department of Biochemistry and Molecular Biology<br><br />
Monash University<br><br />
Clayton<br><br />
Victoria 3800<br><br />
web: [http://vbc.med.monash.edu.au/~fauxn home page]</div>Fauxn