PyMOL Wiki - User contributions [en]

Main Page

2007-07-19T11:16:20Z

Eranhodis: /* Plugins/Scripts */

<br>
* [[TOPTOC|'''Table of Contents''']]

* [[Special:Allpages|Alphabetized Index of all pages]]

* [[Improvements|Discussion of PyMolWiki Improvements]]
<br>

== PyMol Wiki Home ==
You have reached the home of the PyMolWiki, a user-driven web-oriented CMS.

We provide
* updates on [http://pymol.sf.net PyMol]
* a stable user-oriented documentation base
* a thorough treatment of the PyMol program
* feature-rich scripts for general PyMol use

== New Users ==
Welcome! New users who wish to contribute appropriate content are welcome to join. Feel free to add any appropriate content; make an account and get started!

==News==
===PyMol===
* Pymol 1.0 is out!
* [http://delsci.info/dsc/ PyMol Official Documentation] is also available for subscribers.

===Plugins/Scripts===
* [[EMovie]] plugin added. Easy movies in PyMol using a GUI.
* [[DYNMAP]] plugin page created. Check it out!
* [[Cealign|CE Align v0.8-RBS]] released. Better than before. See test case comparisons.
* [[Slerpy]], a set of pymol command extensions to simplify complex movie making is now available.
* Updated the [[Kabsch#The_New_Code|Kabsch]] code with a more elegant solution; fixed a small rotation bug.

===News Archive===
*See our [[Older_News]].

== Links of Interest ==
* [[TOPTOC|Top Level Table of Contents]]
* [[:Category:FAQ|Frequently Asked Questions]] -- new!
* [[PyMolWiki:Community_Portal| How to get involved!]] -- read me if you want to add something
* [[:Category:Script Library| Script Library]] -- add one! (rTools info!)
* [[:Category:Commands|PyMol Commands]] (>130 documented!)
* [[Settings|PyMol Settings]] (6 newly documented; only 470 to go...)
* [[:Special:Allpages| All Pages]]
* [[:Category:Plugins|Plugins]]
* [[:Special:Categories| See All Categories]]

Main Page

2007-07-19T11:15:39Z

Eranhodis: /* Plugins/Scripts */

<br>
* [[TOPTOC|'''Table of Contents''']]

* [[Special:Allpages|Alphabetized Index of all pages]]

* [[Improvements|Discussion of PyMolWiki Improvements]]
<br>

== PyMol Wiki Home ==
You have reached the home of the PyMolWiki, a user-driven web-oriented CMS.

We provide
* updates on [http://pymol.sf.net PyMol]
* a stable user-oriented documentation base
* a thorough treatment of the PyMol program
* feature-rich scripts for general PyMol use

== New Users ==
Welcome! New users who wish to contribute appropriate content are welcome to join. Feel free to add any appropriate content; make an account and get started!

==News==
===PyMol===
* Pymol 1.0 is out!
* [http://delsci.info/dsc/ PyMol Official Documentation] is also available for subscribers.

===Plugins/Scripts===
* [[EMovie]] plugin added. Easy movies in PyMol using a GUI rather than typed commands or scripts.
* [[DYNMAP]] plugin page created. Check it out!
* [[Cealign|CE Align v0.8-RBS]] released. Better than before. See test case comparisons.
* [[Slerpy]], a set of pymol command extensions to simplify complex movie making is now available.
* Updated the [[Kabsch#The_New_Code|Kabsch]] code with a more elegant solution; fixed a small rotation bug.

===News Archive===
*See our [[Older_News]].

== Links of Interest ==
* [[TOPTOC|Top Level Table of Contents]]
* [[:Category:FAQ|Frequently Asked Questions]] -- new!
* [[PyMolWiki:Community_Portal| How to get involved!]] -- read me if you want to add something
* [[:Category:Script Library| Script Library]] -- add one! (rTools info!)
* [[:Category:Commands|PyMol Commands]] (>130 documented!)
* [[Settings|PyMol Settings]] (6 newly documented; only 470 to go...)
* [[:Special:Allpages| All Pages]]
* [[:Category:Plugins|Plugins]]
* [[:Special:Categories| See All Categories]]

EMovie

2007-07-19T00:31:07Z

Eranhodis: /* Program Features */

=eMovie=

eMovie is a plug-in for PyMOL that makes the creation of molecular movies both easy and intuitive via a breakthrough storyboard interface, similar in nature to what is used in the creation of traditional movies. The eMovie homepage is accessible at [http://www.weizmann.ac.il/ISPC/eMovie.html www.weizmann.ac.il/ISPC/eMovie.html].

==Program Features==

eMovie is currently the most user-friendly way for users to create movies in PyMOL (even inexperienced users). Users interact with a user-friendly eMovie GUI that does not require typing commands into PyMOL.

Modular actions such as zooms, rotations, fadings, and morphs (morphs require incentive PyMOL) can be inserted to any frame in the movie and the actions comprising the movie can be reviewed in list-format by viewing the eMovie storyboard. The storyboard also allows for deletion and reinsertion of actions.

Movies can be saved, loaded, and exported as a series of image files to be later merged into a traditional movie format such as .mov using an external program like GraphicConverter.

==Screenshots==

===eMovie in use===
[[Image:eMovie_in_use.jpg]]

===eMovie menu bar===
[[Image:eMovie_menubar.jpg]]

==Availability==

eMovie is freely available for download at the [http://www.weizmann.ac.il/ISPC/eMovie.html eMovie homepage].

==Authors==

eMovie was created at the [http://www.weizmann.ac.il/ISPC/home.html Israel Structural Proteomics Center] (ISPC) at the Weizmann Institute of Science.

==Reference==

Hodis, E., Schreiber, G., Rother, K., Sussman, J.L., eMovie: a storyboard-based tool for making molecular movies, Trends in Biochemical Sciences 32, 199-204 (2007).

EMovie

2007-07-19T00:30:33Z

Eranhodis: /* Screenshots */

=eMovie=

eMovie is a plug-in for PyMOL that makes the creation of molecular movies both easy and intuitive via a breakthrough storyboard interface, similar in nature to what is used in the creation of traditional movies. The eMovie homepage is accessible at [http://www.weizmann.ac.il/ISPC/eMovie.html www.weizmann.ac.il/ISPC/eMovie.html].

==Program Features==

eMovie is the most user-friendly way for users to create movies in PyMOL (even inexperienced users). Users interact with a user-friendly eMovie GUI that does not require typing commands into PyMOL.

Modular actions such as zooms, rotations, fadings, and morphs (morphs require incentive PyMOL) can be inserted to any frame in the movie and the actions comprising the movie can be reviewed in list-format by viewing the eMovie storyboard. The storyboard also allows for deletion and reinsertion of actions.

Movies can be saved, loaded, and exported as a series of image files to be later merged into a traditional movie format such as .mov using an external program like GraphicConverter.

==Screenshots==

===eMovie in use===
[[Image:eMovie_in_use.jpg]]

===eMovie menu bar===
[[Image:eMovie_menubar.jpg]]

==Availability==

eMovie is freely available for download at the [http://www.weizmann.ac.il/ISPC/eMovie.html eMovie homepage].

==Authors==

eMovie was created at the [http://www.weizmann.ac.il/ISPC/home.html Israel Structural Proteomics Center] (ISPC) at the Weizmann Institute of Science.

==Reference==

Hodis, E., Schreiber, G., Rother, K., Sussman, J.L., eMovie: a storyboard-based tool for making molecular movies, Trends in Biochemical Sciences 32, 199-204 (2007).

EMovie

2007-07-19T00:29:28Z

Eranhodis: /* Screenshots */

=eMovie=

eMovie is a plug-in for PyMOL that makes the creation of molecular movies both easy and intuitive via a breakthrough storyboard interface, similar in nature to what is used in the creation of traditional movies. The eMovie homepage is accessible at [http://www.weizmann.ac.il/ISPC/eMovie.html www.weizmann.ac.il/ISPC/eMovie.html].

==Program Features==

eMovie is the most user-friendly way for users to create movies in PyMOL (even inexperienced users). Users interact with a user-friendly eMovie GUI that does not require typing commands into PyMOL.

Modular actions such as zooms, rotations, fadings, and morphs (morphs require incentive PyMOL) can be inserted to any frame in the movie and the actions comprising the movie can be reviewed in list-format by viewing the eMovie storyboard. The storyboard also allows for deletion and reinsertion of actions.

Movies can be saved, loaded, and exported as a series of image files to be later merged into a traditional movie format such as .mov using an external program like GraphicConverter.

==Screenshots==

[[Image:eMovie_in_use.jpg]]

==Availability==

eMovie is freely available for download at the [http://www.weizmann.ac.il/ISPC/eMovie.html eMovie homepage].

==Authors==

eMovie was created at the [http://www.weizmann.ac.il/ISPC/home.html Israel Structural Proteomics Center] (ISPC) at the Weizmann Institute of Science.

==Reference==

Hodis, E., Schreiber, G., Rother, K., Sussman, J.L., eMovie: a storyboard-based tool for making molecular movies, Trends in Biochemical Sciences 32, 199-204 (2007).

EMovie

2007-07-19T00:28:53Z

Eranhodis: /* Screenshots */

=eMovie=

eMovie is a plug-in for PyMOL that makes the creation of molecular movies both easy and intuitive via a breakthrough storyboard interface, similar in nature to what is used in the creation of traditional movies. The eMovie homepage is accessible at [http://www.weizmann.ac.il/ISPC/eMovie.html www.weizmann.ac.il/ISPC/eMovie.html].

==Program Features==

eMovie is the most user-friendly way for users to create movies in PyMOL (even inexperienced users). Users interact with a user-friendly eMovie GUI that does not require typing commands into PyMOL.

Modular actions such as zooms, rotations, fadings, and morphs (morphs require incentive PyMOL) can be inserted to any frame in the movie and the actions comprising the movie can be reviewed in list-format by viewing the eMovie storyboard. The storyboard also allows for deletion and reinsertion of actions.

Movies can be saved, loaded, and exported as a series of image files to be later merged into a traditional movie format such as .mov using an external program like GraphicConverter.

==Screenshots==

[[:Image:eMovie_in_use.jpg]]

==Availability==

eMovie is freely available for download at the [http://www.weizmann.ac.il/ISPC/eMovie.html eMovie homepage].

==Authors==

eMovie was created at the [http://www.weizmann.ac.il/ISPC/home.html Israel Structural Proteomics Center] (ISPC) at the Weizmann Institute of Science.

==Reference==

Hodis, E., Schreiber, G., Rother, K., Sussman, J.L., eMovie: a storyboard-based tool for making molecular movies, Trends in Biochemical Sciences 32, 199-204 (2007).

EMovie

2007-07-19T00:26:44Z

Eranhodis: /* Screenshots */

=eMovie=

eMovie is a plug-in for PyMOL that makes the creation of molecular movies both easy and intuitive via a breakthrough storyboard interface, similar in nature to what is used in the creation of traditional movies. The eMovie homepage is accessible at [http://www.weizmann.ac.il/ISPC/eMovie.html www.weizmann.ac.il/ISPC/eMovie.html].

==Program Features==

eMovie is the most user-friendly way for users to create movies in PyMOL (even inexperienced users). Users interact with a user-friendly eMovie GUI that does not require typing commands into PyMOL.

Modular actions such as zooms, rotations, fadings, and morphs (morphs require incentive PyMOL) can be inserted to any frame in the movie and the actions comprising the movie can be reviewed in list-format by viewing the eMovie storyboard. The storyboard also allows for deletion and reinsertion of actions.

Movies can be saved, loaded, and exported as a series of image files to be later merged into a traditional movie format such as .mov using an external program like GraphicConverter.

==Screenshots==

[[:Media:eMovie_in_use.jpg]]

==Availability==

eMovie is freely available for download at the [http://www.weizmann.ac.il/ISPC/eMovie.html eMovie homepage].

==Authors==

eMovie was created at the [http://www.weizmann.ac.il/ISPC/home.html Israel Structural Proteomics Center] (ISPC) at the Weizmann Institute of Science.

==Reference==

Hodis, E., Schreiber, G., Rother, K., Sussman, J.L., eMovie: a storyboard-based tool for making molecular movies, Trends in Biochemical Sciences 32, 199-204 (2007).

EMovie

2007-07-19T00:23:11Z

Eranhodis:

=eMovie=

eMovie is a plug-in for PyMOL that makes the creation of molecular movies both easy and intuitive via a breakthrough storyboard interface, similar in nature to what is used in the creation of traditional movies. The eMovie homepage is accessible at [http://www.weizmann.ac.il/ISPC/eMovie.html www.weizmann.ac.il/ISPC/eMovie.html].

==Program Features==

eMovie is the most user-friendly way for users to create movies in PyMOL (even inexperienced users). Users interact with a user-friendly eMovie GUI that does not require typing commands into PyMOL.

Modular actions such as zooms, rotations, fadings, and morphs (morphs require incentive PyMOL) can be inserted to any frame in the movie and the actions comprising the movie can be reviewed in list-format by viewing the eMovie storyboard. The storyboard also allows for deletion and reinsertion of actions.

Movies can be saved, loaded, and exported as a series of image files to be later merged into a traditional movie format such as .mov using an external program like GraphicConverter.

==Screenshots==

[[:Image:eMovie_in_use.jpg]]

==Availability==

eMovie is freely available for download at the [http://www.weizmann.ac.il/ISPC/eMovie.html eMovie homepage].

==Authors==

eMovie was created at the [http://www.weizmann.ac.il/ISPC/home.html Israel Structural Proteomics Center] (ISPC) at the Weizmann Institute of Science.

==Reference==

Hodis, E., Schreiber, G., Rother, K., Sussman, J.L., eMovie: a storyboard-based tool for making molecular movies, Trends in Biochemical Sciences 32, 199-204 (2007).

File:EMovie menubar.jpg

2007-07-19T00:19:11Z

Eranhodis: The eMovie menu bar.

The eMovie menu bar.

File:EMovie in use.jpg

2007-07-19T00:16:08Z

Eranhodis: Screenshot of eMovie being used.

Screenshot of eMovie being used.

EMovie

2007-07-19T00:12:44Z

Eranhodis: /* Availability */

=eMovie=

eMovie is a plug-in for PyMOL that makes the creation of molecular movies both easy and intuitive via a breakthrough storyboard interface, similar in nature to what is used in the creation of traditional movies. The eMovie homepage is accessible at [http://www.weizmann.ac.il/ISPC/eMovie.html www.weizmann.ac.il/ISPC/eMovie.html].

==Program Features==

eMovie is the most user-friendly way for users to create movies in PyMOL (even inexperienced users). Users interact with a user-friendly eMovie GUI that does not require typing commands into PyMOL.

Modular actions such as zooms, rotations, fadings, and morphs (morphs require incentive PyMOL) can be inserted to any frame in the movie and the actions comprising the movie can be reviewed in list-format by viewing the eMovie storyboard. The storyboard also allows for deletion and reinsertion of actions.

Movies can be saved, loaded, and exported as a series of image files to be later merged into a traditional movie format such as .mov using an external program like GraphicConverter.

==Availability==

eMovie is freely available for download at the [http://www.weizmann.ac.il/ISPC/eMovie.html eMovie homepage].

==Authors==

eMovie was created at the [http://www.weizmann.ac.il/ISPC/home.html Israel Structural Proteomics Center] (ISPC) at the Weizmann Institute of Science.

==Reference==

Hodis, E., Schreiber, G., Rother, K., Sussman, J.L., eMovie: a storyboard-based tool for making molecular movies, Trends in Biochemical Sciences 32, 199-204 (2007).

EMovie

2007-07-19T00:11:14Z

Eranhodis: /* Program Features */

=eMovie=

eMovie is a plug-in for PyMOL that makes the creation of molecular movies both easy and intuitive via a breakthrough storyboard interface, similar in nature to what is used in the creation of traditional movies. The eMovie homepage is accessible at [http://www.weizmann.ac.il/ISPC/eMovie.html www.weizmann.ac.il/ISPC/eMovie.html].

==Program Features==

eMovie is the most user-friendly way for users to create movies in PyMOL (even inexperienced users). Users interact with a user-friendly eMovie GUI that does not require typing commands into PyMOL.

Modular actions such as zooms, rotations, fadings, and morphs (morphs require incentive PyMOL) can be inserted to any frame in the movie and the actions comprising the movie can be reviewed in list-format by viewing the eMovie storyboard. The storyboard also allows for deletion and reinsertion of actions.

Movies can be saved, loaded, and exported as a series of image files to be later merged into a traditional movie format such as .mov using an external program like GraphicConverter.

==Availability==

eMovie is freely available for download at the [http://weizmann.ac.il/ISPC/eMovie.html eMovie homepage].

==Authors==

eMovie was created at the [http://www.weizmann.ac.il/ISPC/home.html Israel Structural Proteomics Center] (ISPC) at the Weizmann Institute of Science.

==Reference==

Hodis, E., Schreiber, G., Rother, K., Sussman, J.L., eMovie: a storyboard-based tool for making molecular movies, Trends in Biochemical Sciences 32, 199-204 (2007).

EMovie

2007-07-19T00:10:02Z

Eranhodis: /* Program Features */

=eMovie=

eMovie is a plug-in for PyMOL that makes the creation of molecular movies both easy and intuitive via a breakthrough storyboard interface, similar in nature to what is used in the creation of traditional movies. The eMovie homepage is accessible at [http://www.weizmann.ac.il/ISPC/eMovie.html www.weizmann.ac.il/ISPC/eMovie.html].

==Program Features==

eMovie is currently the easiest way (in our opinion) for users to create movies in PyMOL (even inexperienced users). Users interact with a user-friendly eMovie GUI that does not require typing commands into PyMOL.

Modular actions such as zooms, rotations, fadings, and morphs (morphs require incentive PyMOL) can be inserted to any frame in the movie and the actions comprising the movie can be reviewed in list-format by viewing the eMovie storyboard. The storyboard also allows for deletion and reinsertion of actions.

Movies can be saved, loaded, and exported as a series of image files to be later merged into a traditional movie format such as .mov using an external program like GraphicConverter.

==Availability==

eMovie is freely available for download at the [http://weizmann.ac.il/ISPC/eMovie.html eMovie homepage].

==Authors==

eMovie was created at the [http://www.weizmann.ac.il/ISPC/home.html Israel Structural Proteomics Center] (ISPC) at the Weizmann Institute of Science.

==Reference==

Hodis, E., Schreiber, G., Rother, K., Sussman, J.L., eMovie: a storyboard-based tool for making molecular movies, Trends in Biochemical Sciences 32, 199-204 (2007).

EMovie

2007-07-19T00:08:06Z

Eranhodis:

=eMovie=

eMovie is a plug-in for PyMOL that makes the creation of molecular movies both easy and intuitive via a breakthrough storyboard interface, similar in nature to what is used in the creation of traditional movies. The eMovie homepage is accessible at [http://www.weizmann.ac.il/ISPC/eMovie.html www.weizmann.ac.il/ISPC/eMovie.html].

==Program Features==

eMovie is currently the easiest way (in our opinion) for users inexperienced in moving-making in PyMOL to create movies in PyMOL. Users interact with a user-friendly eMovie GUI that does not require typing commands into PyMOL.

Modular actions such as zooms, rotations, fadings, and morphs (morphs require incentive PyMOL) can be inserted to any frame in the movie and the actions comprising the movie can be reviewed in list-format by viewing the eMovie storyboard. The storyboard also allows for deletion and reinsertion of actions.

Movies can be saved, loaded, and exported as a series of image files to be later merged into a traditional movie format such as .mov using an external program like GraphicConverter.

==Availability==

eMovie is freely available for download at the [http://weizmann.ac.il/ISPC/eMovie.html eMovie homepage].

==Authors==

eMovie was created at the [http://www.weizmann.ac.il/ISPC/home.html Israel Structural Proteomics Center] (ISPC) at the Weizmann Institute of Science.

==Reference==

Hodis, E., Schreiber, G., Rother, K., Sussman, J.L., eMovie: a storyboard-based tool for making molecular movies, Trends in Biochemical Sciences 32, 199-204 (2007).

EMovie

2007-07-18T23:52:06Z

Eranhodis: eMovie is a plug-in for PyMOL for the easy creation of molecular movies and animations using a storyboard interface.

eMovie is a plug-in for PyMOL that makes the creation of molecular movies both easy and intuitive via a breakthrough storyboard interface, similar in nature to what is used in the creation of traditional movies.

To download eMovie, please visit the eMovie homepage at [http://www.weizmann.ac.il/ISPC/eMovie.html www.weizmann.ac.il/ISPC/eMovie.html].

EMovie

2007-07-18T23:50:29Z

Eranhodis:

eMovie is a plug-in for PyMOL that makes the creation of molecular movies both easy and intuitive via a breakthrough storyboard interface, similar in nature to what is used in the creation of traditional movies.

To download eMovie, please visit the eMovie homepage at [www.weizmann.ac.il/ISPC/eMovie.html www.weizmann.ac.il/ISPC/eMovie.html].

EMovie

2007-07-18T23:49:24Z

Eranhodis:

EMovie

2007-07-18T23:46:48Z

Eranhodis: eMovie is a plug-in for PyMOL that makes the creation of molecular movies both easy and intuitive via a breakthrough storyboard interface.