PyMOL Wiki - User contributions [en]

DrawGridBox

2016-05-25T18:32:46Z

Clgeng:

{{Infobox script-repo
|type = script
|filename = drawgridbox.py
|author = [[User:clgeng|Cunliang Geng]]
|license = BSD-2-Clause
}}

This script adds the [[drawgridbox]] command, which draw grid boxes around a selection.

== Usage ==

drawgridbox [ selection, [nx, [ny, [nz, [padding, [lw, [r, [g, [b]]]]]]]]]

==Prameters==

* '''selection''' = str: atom selection {default: all}
*'''nx''' = int: number of grids on axis X {default: 10}
*'''ny''' = int: number of grids on axis Y {default: 10}
*'''nz''' = int: number of grids on axis Z {default: 10}
*'''padding''' = float: default 0.0
*'''lw''' = float: line width {default: 2.0}
*'''r''' = float: red color component, valid range is [0.0, 1.0] {default 1.0}
*'''g''' = float: green color component, valid range is [0.0, 1.0] {default 1.0}
*'''b''' = float: blue color component, valid range is [0.0, 1.0] {default 1.0}

== Examples ==

<source lang="python">
load drawgridbox.py
fetch 1cbh
show surface
drawgridbox 1cbh, nx=5, ny=5, nz=5, lw=1, g=0, b=0
</source>

[[File:Drawgridbox.png|200px]]

<source lang="python">
drawgridbox 1cbh, nx=5, ny=5, nz=5, padding=5, lw=1, r=0, g=0
</source>

[[File:Drawgridbox padding.png|200px]]

[[Category:Script_Library]]
[[Category:CGO]]
[[Category:Pymol-script-repo]]

DrawGridBox

2016-05-25T18:31:04Z

Clgeng:

{{Infobox script-repo
|type = script
|filename = drawgridbox.py
|author = [[User:clgeng|Cunliang Geng]]
|license = BSD-2-Clause
}}

This script adds the [[drawgridbox]] command, which draw grid boxes around a selection.

== Usage ==

drawgridbox [ selection, [nx, [ny, [nz, [padding, [lw, [r, [g, [b]]]]]]]]]

==Prameters==

* '''selection''' = str: atom selection {default: all}
*'''nx''' = int: number of grids on axis X {default: 10}
*'''ny''' = int: number of grids on axis Y {default: 10}
*'''nz''' = int: number of grids on axis Z {default: 10}
*'''padding''' = float: default 0.0
*'''lw''' = float: line width {default: 2.0}
*'''r''' = float: red color component, valid range is [0.0, 1.0] {default 1.0}
*'''g''' = float: green color component, valid range is [0.0, 1.0] {default 1.0}
*'''b''' = float: blue color component, valid range is [0.0, 1.0] {default 1.0}

== Examples ==

<source lang="python">
load drawgridbox.py
fetch 1cbh
show surface
drawgridbox 1cbh, nx=5, ny=5, lw=1, nz=5, g=0, b=0
</source>

[[File:Drawgridbox.png|200px]]

<source lang="python">
drawgridbox 1cbh, nx=5, ny=5,nz=5, padding=5, lw=1, r=0, g=0
</source>

[[File:Drawgridbox padding.png|200px]]

[[Category:Script_Library]]
[[Category:CGO]]
[[Category:Pymol-script-repo]]

File:Drawgridbox padding.png

2016-05-25T18:29:16Z

Clgeng: Clgeng uploaded a new version of File:Drawgridbox padding.png

DrawGridBox

2016-05-25T18:25:56Z

Clgeng:

{{Infobox script-repo
|type = script
|filename = drawgridbox.py
|author = [[User:clgeng|Cunliang Geng]]
|license = BSD-2-Clause
}}

This script adds the [[drawgridbox]] command, which draw grid boxes around a selection.

== Usage ==

drawgridbox [ selection, [nx, [ny, [nz, [padding, [lw, [r, [g, [b]]]]]]]]]

==Prameters==

* '''selection''' = str: atom selection {default: all}
*'''nx''' = int: number of grids on axis X {default: 10}
*'''ny''' = int: number of grids on axis Y {default: 10}
*'''nz''' = int: number of grids on axis Z {default: 10}
*'''padding''' = float: default 0.0
*'''lw''' = float: line width {default: 2.0}
*'''r''' = float: red color component, valid range is [0.0, 1.0] {default 1.0}
*'''g''' = float: green color component, valid range is [0.0, 1.0] {default 1.0}
*'''b''' = float: blue color component, valid range is [0.0, 1.0] {default 1.0}

== Examples ==

<source lang="python">
load drawgridbox.py
fetch 1cbh
show surface
drawgridbox 1cbh, nx=5, ny=5, lw=1, nz=5, g=0, b=0
</source>

[[File:Drawgridbox.png|200px|left]]

<source lang="python">
drawgridbox 1cbh, nx=5, ny=5,nz=5, padding=5, lw=1, r=0, g=0
</source>

[[File:Drawgridbox padding.png|200px|left]]

[[Category:Script_Library]]
[[Category:CGO]]
[[Category:Pymol-script-repo]]

DrawGridBox

2016-05-25T18:24:46Z

Clgeng:

{{Infobox script-repo
|type = script
|filename = drawgridbox.py
|author = [[User:clgeng|Cunliang Geng]]
|license = BSD-2-Clause
}}

This script adds the [[drawgridbox]] command, which draw grid boxes around a selection.

== Usage ==

drawgridbox [ selection, [nx, [ny, [nz, [padding, [lw, [r, [g, [b]]]]]]]]]

==Prameters==

* '''selection''' = str: atom selection {default: all}
*'''nx''' = int: number of grids on axis X {default: 10}
*'''ny''' = int: number of grids on axis Y {default: 10}
*'''nz''' = int: number of grids on axis Z {default: 10}
*'''padding''' = float: default 0.0
*'''lw''' = float: line width {default: 2.0}
*'''r''' = float: red color component, valid range is [0.0, 1.0] {default 1.0}
*'''g''' = float: green color component, valid range is [0.0, 1.0] {default 1.0}
*'''b''' = float: blue color component, valid range is [0.0, 1.0] {default 1.0}

== Examples ==

<source lang="python">
load drawgridbox.py
fetch 1cbh
show surface
drawgridbox 1cbh, nx=5, ny=5, lw=1, nz=5, g=0, b=0
</source>

[[File:Drawgridbox.png|200px|left]]

<source lang="python">
drawgridbox 1cbh, nx=5, ny=5,nz=5, padding=5, lw=1, r=0, g=0
</source>

[[File:Drawgridbox padding.png|200px|left]]

[[Category:Script_Library]]
[[Category:CGO]]
[[Category:Pymol-script-repo]]

DrawGridBox

2016-05-25T18:23:30Z

Clgeng:

{{Infobox script-repo
|type = script
|filename = drawgridbox.py
|author = [[User:clgeng|Cunliang Geng]]
|license = BSD-2-Clause
}}

This script adds the [[drawgridbox]] command, which draw grid boxes around a selection.

== Usage ==

drawgridbox [ selection, [nx, [ny, [nz, [padding, [lw, [r, [g, [b]]]]]]]]]

==Prameters==

* '''selection''' = str: atom selection {default: all}
*'''nx''' = int: number of grids on axis X {default: 10}
*'''ny''' = int: number of grids on axis Y {default: 10}
*'''nz''' = int: number of grids on axis Z {default: 10}
*'''padding''' = float: default 0.0
*'''lw''' = float: line width {default: 2.0}
*'''r''' = float: red color component, valid range is [0.0, 1.0] {default 1.0}
*'''g''' = float: green color component, valid range is [0.0, 1.0] {default 1.0}
*'''b''' = float: blue color component, valid range is [0.0, 1.0] {default 1.0}

== Examples ==

<source lang="python">
load drawgridbox.py
fetch 1cbh
show surface
drawgridbox 1cbh, nx=5, ny=5, lw=1, nz=5, g=0, b=0
</source>

[[File:Drawgridbox.png|200px|left]]

<source lang="python">
drawgridbox 1cbh, nx=5, ny=5,nz=5, padding=5, lw=1, r=0, g=0
</source>

[[File:Drawgridbox padding.png|200px|left]]

[[Category:Script_Library]]
[[Category:CGO]]
[[Category:Pymol-script-repo]]

DrawGridBox

2016-05-25T18:22:30Z

Clgeng:

{{Infobox script-repo
|type = script
|filename = drawgridbox.py
|author = [[User:clgeng|Cunliang Geng]]
|license = BSD-2-Clause
}}

This script adds the [[drawgridbox]] command, which draw grid boxes around a selection.

== Usage ==

drawgridbox [ selection, [nx, [ny, [nz, [padding, [lw, [r, [g, [b]]]]]]]]]

==Prameters==

* '''selection''' = str: atom selection {default: all}
*'''nx''' = int: number of grids on axis X {default: 10}
*'''ny''' = int: number of grids on axis Y {default: 10}
*'''nz''' = int: number of grids on axis Z {default: 10}
*'''padding''' = float: default 0.0
*'''lw''' = float: line width {default: 2.0}
*'''r''' = float: red color component, valid range is [0.0, 1.0] {default 1.0}
*'''g''' = float: green color component, valid range is [0.0, 1.0] {default 1.0}
*'''b''' = float: blue color component, valid range is [0.0, 1.0] {default 1.0}

== Examples ==

Combining DSSR block representation with regular PyMOL cartoons:

<source lang="python">
load drawgridbox.py
fetch 1cbh
show surface
drawgridbox 1cbh, nx=5, ny=5, lw=1, nz=5, g=0, b=0
</source>

[[File:Drawgridbox.png|200px|thumb|left]]

<source lang="python">
drawgridbox 1cbh, nx=5, ny=5,nz=5, padding=5, lw=1, r=0, g=0
</source>

[[File:Drawgridbox padding.png|200px|thumb|left]]

[[Category:Script_Library]]
[[Category:CGO]]
[[Category:Pymol-script-repo]]

DrawGridBox

2016-05-25T18:21:48Z

Clgeng:

{{Infobox script-repo
|type = script
|filename = drawgridbox.py
|author = [[User:clgeng|Cunliang Geng]]
|license = BSD-2-Clause
}}

This script adds the [[drawgridbox]] command, which draw grid boxes around a selection.

== Usage ==

drawgridbox [ selection, [nx, [ny, [nz, [padding, [lw, [r, [g, [b]]]]]]]]]

==Prameters==

* '''selection''' = str: atom selection {default: all}
*'''nx''' = int: number of grids on axis X {default: 10}
*'''ny''' = int: number of grids on axis Y {default: 10}
*'''nz''' = int: number of grids on axis Z {default: 10}
*'''padding''' = float: default 0.0
*'''lw''' = float: line width {default: 2.0}
*'''r''' = float: red color component, valid range is [0.0, 1.0] {default 1.0}
*'''g''' = float: green color component, valid range is [0.0, 1.0] {default 1.0}
*'''b''' = float: blue color component, valid range is [0.0, 1.0] {default 1.0}

== Examples ==

Combining DSSR block representation with regular PyMOL cartoons:

<source lang="python">
load drawgridbox.py
fetch 1cbh
show surface
drawgridbox 1cbh, nx=5, ny=5, lw=1, nz=5, g=0, b=0
</source>

[[File:Drawgridbox.png|200px|thumb|left]]

<source lang="python">
drawgridbox 1cbh, nx=5, ny=5,nz=5, padding=5, lw=1, r=0, g=0
</source>

[[File:Drawgridbox padding.png|200px|thumb|left]]

[[Category:Script_Library]]
[[Category:CGO]]
[[Category:Pymol-script-repo]]

DrawGridBox

2016-05-25T18:17:28Z

Clgeng:

{{Infobox script-repo
|type = script
|filename = drawgridbox.py
|author = [[User:clgeng|Cunliang Geng]]
|license = BSD-2-Clause
}}

This script adds the [[drawgridbox]] command, which draw grid boxes around a selection.

== Usage ==

drawgridbox [ selection, [nx, [ny, [nz, [padding, [lw, [r, [g, [b]]]]]]]]]

==Prameters==

* '''selection''' = str: atom selection {default: all}
*'''nx''' = int: number of grids on axis X {default: 10}
*'''ny''' = int: number of grids on axis Y {default: 10}
*'''nz''' = int: number of grids on axis Z {default: 10}
*'''padding''' = float: default 0.0
*'''lw''' = float: line width {default: 2.0}
*'''r''' = float: red color component, valid range is [0.0, 1.0] {default 1.0}
*'''g''' = float: green color component, valid range is [0.0, 1.0] {default 1.0}
*'''b''' = float: blue color component, valid range is [0.0, 1.0] {default 1.0}

== Examples ==

Combining DSSR block representation with regular PyMOL cartoons:

<source lang="python">
load drawgridbox.py
fetch 1cbh
show surface
drawgridbox 1cbh, nx=5, ny=5, lw=1, nz=5, g=0, b=0
</source>

[[File:Drawgridbox.png]]

<source lang="python">
drawgridbox 1cbh, nx=5, ny=5,nz=5, padding=5, lw=1, r=0, g=0
</source>

[[File:Drawgridbox padding.png]]

[[Category:Script_Library]]
[[Category:CGO]]
[[Category:Pymol-script-repo]]

File:Drawgridbox.png

2016-05-25T18:17:01Z

Clgeng: Clgeng moved page File:Gridbox.png to File:Drawgridbox.png

File:Drawgridbox.png

2016-05-25T18:14:10Z

Clgeng: Clgeng uploaded a new version of File:Gridbox.png

File:Drawgridbox padding.png

2016-05-25T18:13:32Z

Clgeng: Clgeng moved page File:Gridbox padding.png to File:Drawgridbox padding.png

DrawGridBox

2016-05-25T14:21:40Z

Clgeng:

{{Infobox script-repo
|type = script
|filename = drawgridbox.py
|author = [[User:clgeng|Cunliang Geng]]
|license = BSD-2-Clause
}}

This script adds the [[drawgridbox]] command, which draw grid boxes around a selection.

== Usage ==

drawgridbox [ selection, [nx, [ny, [nz, [padding, [lw, [r, [g, [b]]]]]]]]]

==Prameters==

* '''selection''' = str: atom selection {default: all}
*'''nx''' = int: number of grids on axis X {default: 10}
*'''ny''' = int: number of grids on axis Y {default: 10}
*'''nz''' = int: number of grids on axis Z {default: 10}
*'''padding''' = float: default 0.0
*'''lw''' = float: line width {default: 2.0}
*'''r''' = float: red color component, valid range is [0.0, 1.0] {default 1.0}
*'''g''' = float: green color component, valid range is [0.0, 1.0] {default 1.0}
*'''b''' = float: blue color component, valid range is [0.0, 1.0] {default 1.0}

== Examples ==

Combining DSSR block representation with regular PyMOL cartoons:

<source lang="python">
load drawgridbox.py
fetch 1cbh
show surface
drawgridbox 1cbh, nx=5, ny=5,nz=5, g=0, b=0
</source>

[[File:Gridbox.png]]

<source lang="python">
drawgridbox 1cbh, nx=5, ny=5,nz=5, padding=2, r=0, g=0
</source>

[[File:Gridbox padding.png]]

[[Category:Script_Library]]
[[Category:CGO]]
[[Category:Pymol-script-repo]]

DrawGridBox

2016-05-25T13:57:07Z

Clgeng: Drawgridbox page

{{Infobox script-repo
|type = script
|filename = drawgridbox.py
|author = [[User:clgeng|Cunliang Geng]]
|license = BSD-2-Clause
}}

This script adds the [[drawgridbox]] command, which draw a grid box around a selection.

== Usage ==

drawgridbox [ selection, [nx, [ny, [nz, [padding, [lw, [r, [g, [b]]]]]]]]]

==Prameters==

* '''selection''' = str: atom selection {default: all}
*'''nx''' = int: number of grids on axis X {default: 10}
*'''ny''' = int: number of grids on axis Y {default: 10}
*'''nz''' = int: number of grids on axis Z {default: 10}
*'''padding''' = float: default 0.0
*'''lw''' = float: line width {default: 2.0}
*'''r''' = float: red color component, valid range is [0.0, 1.0] {default 1.0}
*'''g''' = float: green color component, valid range is [0.0, 1.0] {default 1.0}
*'''b''' = float: blue color component, valid range is [0.0, 1.0] {default 1.0}

== Examples ==

Combining DSSR block representation with regular PyMOL cartoons:

<source lang="python">
load drawgridbox.py
fetch 1cbh
show surface
drawgridbox 1cbh, nx=5, ny=5,nz=5, g=0, b=0
</source>

[[File:Gridbox.png]]

<source lang="python">
drawgridbox 1cbh, nx=5, ny=5,nz=5, padding=2, r=0, g=0
</source>

[[File:Gridbox padding.png]]

[[Category:Script_Library]]
[[Category:CGO]]
[[Category:Pymol-script-repo]]

File:Drawgridbox padding.png

2016-05-19T12:37:29Z

Clgeng:

File:Drawgridbox.png

2016-05-19T12:36:47Z

Clgeng: