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- This is a list of all commands in the Maps Module for PyMol's interface.0 members (0 subcategories, 0 files) - 01:30, 28 March 2014
- The following steps can be used to read CCP4-format electron density maps into pymol for the generation of publication-quality images. If the ccp4 maps loaded by PyMOL seem smaller/larger than maps in other programs this might be due to normalization. To stop PyMOL from n3 KB (540 words) - 20:23, 9 July 2015
- 516 bytes (83 words) - 20:24, 9 July 2015
- [[Category:Maps]]1 KB (193 words) - 20:24, 9 July 2015
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- This is a list of all commands in the Maps Module for PyMol's interface.0 members (0 subcategories, 0 files) - 01:30, 28 March 2014
- for example trim all your maps to 3 Angstroms around ligands with one [[Category:Maps]]826 bytes (126 words) - 02:16, 28 March 2014
- ...] you can add two maps together or create a consensus map from a series of maps or even take a difference map. # add 3 maps2 KB (281 words) - 02:16, 28 March 2014
- ...or computation, improved access to PyMOL internal data structures, like DX maps, is required. ** I/O for maps is the rate limiting step;953 bytes (145 words) - 03:24, 10 December 2018
- [[Category:Maps]]299 bytes (36 words) - 16:19, 20 July 2020
- [[Category:Maps]]295 bytes (44 words) - 02:16, 28 March 2014
- The following steps can be used to read CCP4-format electron density maps into pymol for the generation of publication-quality images. If the ccp4 maps loaded by PyMOL seem smaller/larger than maps in other programs this might be due to normalization. To stop PyMOL from n3 KB (540 words) - 20:23, 9 July 2015
- ...to PyMOL from another tool, then it is definitely worth comparing how the maps are being represented by creating an equivalent figure in both, making sure [[Category:Maps]]4 KB (555 words) - 04:05, 7 December 2020
- [[Category:Maps]]667 bytes (98 words) - 04:05, 7 December 2020
- [[Category:Maps]]886 bytes (95 words) - 04:22, 12 November 2018
- [[Category:Maps]]1 KB (193 words) - 20:24, 9 July 2015
- ...r coded distance map. It is also possible to calculate difference distance maps between two conformations of a protein. ===Distance maps===6 KB (926 words) - 05:13, 26 May 2020
- [[File:bni_delphimap.jpg|150px|||Load and show DelPhi or other maps]] * value maps. (7 closed cavity to 1 open)8 KB (934 words) - 05:42, 31 May 2016
- [[Category:Maps]]1 KB (165 words) - 02:16, 28 March 2014
- ...contact map images to the residues in PyMOL in a interactive way. Contact maps are pixel graphics where each protein residue corresponds to one line and o # This PyMOL Plugin Contact Maps Visualizer is4 KB (589 words) - 03:43, 6 December 2021
- ''New in PyMOL 1.7.2: Support type=emd to download maps from [http://www.emdatabank.org/ EMDataBank]'' ...n PyMOL 1.3: Support type=2fofc and type=fofc to download electron density maps''4 KB (590 words) - 03:58, 4 March 2019
- [[Category:Maps]]2 KB (276 words) - 03:21, 22 June 2021
- ...acromodel files must end in ".mmod", XPLOR maps must end in ".xplor", CCP4 maps must end in ".ccp4", Raster3D input (Molscript output) must end in ".r3d",5 KB (824 words) - 04:03, 8 January 2018
- * Supports displaying variance of contact points from a series of contact maps generated from multi-model PDB files. * CMPyMOL stores the calculated contact maps, heat maps and contact density information in a local SQLite database for fast and eas8 KB (1,116 words) - 05:42, 31 May 2016
- == Visualizing multiple maps at once == Now you have two correctly generated electrostatics potential maps (note: the reason I had you do things with one structure at a time loaded i12 KB (1,841 words) - 18:57, 31 October 2015