This is a read-only mirror of pymolwiki.org
User contributions
Jump to navigation
Jump to search
- 10:50, 23 April 2021 diff hist 0 m Windows Install reformulate a hyperlink
- 10:46, 23 April 2021 diff hist +276 Windows Install add an important preparation step (VC++) before installation.
- 11:17, 12 November 2019 diff hist +45 m Fit recommend Pair_Fit if atoms do not match
- 11:13, 12 November 2019 diff hist +4 m Fit highlight usage caveat
- 11:25, 17 May 2018 diff hist +29 m Molecular Sculpting put the source of the answer to the beginning.
- 14:21, 16 May 2018 diff hist -1 m Get Color Indices fix a type
- 14:21, 16 May 2018 diff hist +150 m Get Color Indices add an example
- 15:50, 22 February 2018 diff hist -2 m Load Traj →Notes: fix broken link to ptraj: it is now cpptraj!
- 06:51, 10 October 2017 diff hist -28 m Mview →360° rotation of a single object
- 06:50, 10 October 2017 diff hist +106 m Mview add comments to keyword object
- 09:39, 12 June 2017 diff hist 0 m Intra fit
- 09:38, 12 June 2017 diff hist +15 m Intra fit add extra_fit to reference
- 08:17, 4 May 2017 diff hist +112 m Group add operation instructions for editing group
- 13:56, 24 October 2016 diff hist +34 m Surface quality link to huge surfaces
- 13:22, 24 October 2016 diff hist +63 m Surface NOTE the coordinate system of saved coordinates
- 14:36, 21 October 2016 diff hist +51 m Surface only surface representation can be saved as .obj
- 07:27, 6 October 2016 diff hist +12 FetchLocal add async to cmd.fetch. It was in the API of fetchlocal but not passed to fetch.
- 23:02, 18 March 2015 diff hist +153 MSMS →Introduction
- 23:01, 18 March 2015 diff hist -8 MSMS →External links
- 23:00, 18 March 2015 diff hist -180 MSMS →Introduction
- 22:59, 18 March 2015 diff hist +4 MSMS →Introduction
- 22:58, 18 March 2015 diff hist +178 MSMS →Introduction
- 22:56, 18 March 2015 diff hist -145 MSMS →Introduction
- 08:16, 21 August 2014 diff hist +204 m Ideas →More Ideas (Please add your own!): add "update selection" feature request.
- 07:57, 21 August 2014 diff hist -169 m Displaying Biochemical Properties →Hydrogen bonds where find->polar contacts doesn't do what you need: remove broken links to Gareth Stockwell's page
- 09:40, 20 August 2014 diff hist +179 m Pdb conect nodup →Notes: add spcification of aromatic bonds
- 08:29, 20 August 2014 diff hist +88 m Pdb conect nodup →Notes: add link to jmol support for bond order
- 08:27, 20 August 2014 diff hist -2 Pdb conect nodup →Overview
- 08:26, 20 August 2014 diff hist -12 m Pdb conect nodup →Overview
- 08:26, 20 August 2014 diff hist +67 m Pdb conect nodup
- 08:13, 20 August 2014 diff hist +894 N Pdb conect nodup new page about setting pdb_conect_nodup and tricks to store bond order in PDB files.
- 08:34, 27 January 2014 diff hist +5 m DSSP Stride
- 08:33, 27 January 2014 diff hist +80 m DSSP Stride
- 10:21, 20 November 2013 diff hist +4,586 Nm Iterate →Example
- 09:52, 20 November 2013 diff hist -6 Pair fit →USER EXAMPLES/COMMENTS
- 09:52, 20 November 2013 diff hist +721 N Intra rms cur →USER EXAMPLES/COMMENTS
- 09:52, 20 November 2013 diff hist +83 Intra rms user comments had been removed for its irrelevance. They are copied to rms page given its importance and add a link to the page.
- 09:50, 20 November 2013 diff hist +1,745 N Intra fit →USER COMMENTS
- 09:49, 20 November 2013 diff hist -6 m Rms cur →USER COMMENTS: update link showing command caveats
- 09:48, 20 November 2013 diff hist +881 Rms the user comments section in page intra_rms referred by this page had been removed for irrelevance. Based on its importance the section is copied here.
- 11:45, 10 October 2013 diff hist -15 Molecular Sculpting add reference to this entry
- 08:31, 7 October 2013 diff hist +1,066 Nm Hide add one example of hiding hydrogen atoms and waters
- 11:33, 27 May 2013 diff hist +4 m Pair fit correct selection macro in the 1st example
- 14:29, 27 February 2013 diff hist +69 m Color →Getting Atom Colors
- 09:59, 27 February 2013 diff hist +667 Pair fit add examples and notes copied from PyMOL fitting.py
- 15:19, 3 January 2013 diff hist +2,134 Nm Findseq add reference to Psico function select_pepseq
- 07:18, 23 October 2012 diff hist +267 DSSP Stride →Introduction: add news about the update of the plugin
- 11:09, 22 October 2012 diff hist +528 N Pdb use ter records →Example
- 11:08, 22 October 2012 diff hist -71 Pdb use ter records create page about parameter pdb_use_ter_records
- 13:25, 19 October 2012 diff hist +77 Fetch →Example: add example of multiple commands in one line
- 13:20, 16 October 2012 diff hist +3,452 Nm FetchLocal →See Also: add reference to Psico
- 12:06, 11 October 2012 diff hist +56 Show →Example: add hide nonpolar hydro. Derived by logging menu item (H->hydrogens->nonpolar)
- 14:26, 21 September 2012 diff hist +153 Split states
- 14:19, 21 September 2012 diff hist -11 m FetchLocal →The Code: load(object=name)
- 11:50, 21 September 2012 diff hist -11 User:Hongbo zhu
- 11:50, 21 September 2012 diff hist +1 m User:Hongbo zhu
- 11:46, 21 September 2012 diff hist -13 FetchLocal create a new page FetchLocal for script fetchlocal
- 11:03, 21 September 2012 diff hist +16 m Fetch →See Also
- 10:59, 21 September 2012 diff hist -4 m BiologicalUnit →See Also
- 14:50, 20 September 2012 diff hist +295 N Nb spheres
- 14:47, 20 September 2012 diff hist +84 N File:Nb spheres.png This png is generated using PyMOL 1.5.0.1. PDB structure model 1acb.pdb is rendered.
- 09:06, 18 September 2012 diff hist -2 m Fetch →Syntax
- 08:57, 18 September 2012 diff hist +9 m Displaying Biochemical Properties →See Also
- 16:21, 19 April 2012 diff hist -1 m User talk:Inchoate
- 16:21, 19 April 2012 diff hist +270 User talk:Inchoate update one_letter dict in findseq.py
- 16:10, 19 April 2012 diff hist -44 DSSP Stride →Introduction
- 13:36, 19 April 2012 diff hist +44 DSSP Stride →Introduction
- 07:52, 16 April 2012 diff hist 0 User:Hongbo zhu
- 07:50, 16 April 2012 diff hist +606 User:Hongbo zhu
- 09:05, 12 April 2012 diff hist +1,167 N MSMS →External links
- 09:00, 12 April 2012 diff hist -1,070 Dssp stride Redirected page to DSSP Stride
- 08:57, 12 April 2012 diff hist 0 Msms Redirected page to MSMS
- 08:57, 12 April 2012 diff hist -1,071 Msms Replaced content with "## redirect [MSMS]"
- 08:56, 12 April 2012 diff hist -78 MSMS
- 08:56, 12 April 2012 diff hist +325 Msms
- 08:49, 12 April 2012 diff hist 0 Stride Redirected page to DSSP Stride
- 08:48, 12 April 2012 diff hist 0 DSSP Redirected page to DSSP Stride
- 08:48, 12 April 2012 diff hist +1,095 N DSSP Stride Created page with "= Introduction = {{Infobox script-repo |type = plugin |filename = plugins/dssp_stride.py |author = Hongbo Zhu |license = - }} [http://swift.cmbi.r..."
- 08:45, 12 April 2012 diff hist +78 Dssp stride
- 08:40, 12 April 2012 diff hist +70 Dssp stride
- 08:35, 12 April 2012 diff hist +78 Dssp stride →Introduction
- 08:26, 12 April 2012 diff hist +134 m Dssp stride upgrade plugin download link
- 19:18, 10 April 2012 diff hist -3 m Dssp stride →Introduction: correct change author name
- 11:23, 2 April 2012 diff hist +155 Pymolrc add reload .pymolrc
- 10:58, 2 April 2012 diff hist +51 m Pymolrc add example of set fetch_path
- 10:54, 2 April 2012 diff hist +12 m Reinitialize add ref to pymolrc
- 10:50, 2 April 2012 diff hist +38 m Reinitialize add SEE ALSO Delete all, a command removes all sel and obj without resetting all env param
- 10:21, 21 December 2011 diff hist +52 User:Hongbo zhu
- 09:59, 29 July 2011 diff hist +474 Alter →EXAMPLES
- 12:18, 18 May 2011 diff hist +499 Nm Pdb echo tags →Usage
- 21:11, 14 May 2011 diff hist +130 FindSurfaceResidues →The Code
- 21:04, 14 May 2011 diff hist +38 FindSurfaceResidues →Overview
- 14:39, 4 May 2011 diff hist +38 Sphere quality
- 08:14, 4 May 2011 diff hist -114 Ideas →Ideas for Plugin Developers
- 08:05, 4 May 2011 diff hist +6,539 Main Page
- 08:04, 4 May 2011 diff hist +9 User:Hongbo zhu
- 07:58, 4 May 2011 diff hist +510 Fetch
- 00:03, 25 April 2011 diff hist +615 N Stride Created page with "400px|thumb|right|Demonstration of DSSP & Stride plugin (pdb:1pyg). = Introduction = [http://webclu.bio.wzw.tum.de/stride/ Stride] is a..."
- 00:01, 25 April 2011 diff hist 0 N File:Demo DSSP Stride plugin 1pyg.png
- 13:28, 13 April 2011 diff hist 0 File:Demo DSSP plugin 1pyg.png uploaded a new version of "File:Demo DSSP plugin 1pyg.png": Reverted to version as of 13:26, 13 April 2011
- 13:28, 13 April 2011 diff hist 0 File:Demo DSSP plugin 1pyg.png uploaded a new version of "File:Demo DSSP plugin 1pyg.png"
- 13:26, 13 April 2011 diff hist 0 File:Demo DSSP plugin 1pyg.png uploaded a new version of "File:Demo DSSP plugin 1pyg.png"
- 21:02, 12 April 2011 diff hist +6,295 Nm Launching PyMOL →Windows
- 14:08, 12 April 2011 diff hist +131 m User:Hongbo zhu
- 14:02, 12 April 2011 diff hist +1 m Dssp stride →Introduction
- 14:01, 12 April 2011 diff hist +25 Dssp stride
- 14:00, 12 April 2011 diff hist 0 N File:Demo DSSP plugin 1pyg.png
- 13:58, 12 April 2011 diff hist +537 N Dssp stride Created page with "400px|thumb|right|Demonstration of MSMS plugin. = Introduction = [http://swift.cmbi.ru.nl/gv/dssp/ DSSP] is a popular tool for assigning secondary structure..."
- 06:56, 6 April 2011 diff hist -1 Run
- 09:22, 28 March 2011 diff hist -31 Symexp
- 09:20, 28 March 2011 diff hist +110 Symexp →See Also
- 17:23, 19 March 2011 diff hist +530 N Msms Created page with "400px|thumb|right|Demonstration of MSMS plugin. = Introduction = [http://mgltools.scripps.edu/packages/MSMS/ MSMS] is an excellent tool for computing protei..."
- 17:18, 19 March 2011 diff hist +50 N File:Example.png Demonstration of MSMS plugin for PyMOL (PDB: 1acb)
- 17:01, 19 March 2011 diff hist +1 User:Hongbo zhu
- 16:59, 19 March 2011 diff hist +97 N User:Hongbo zhu Created page with "Hongbo Zhu Postdoctoral Researcher @ Structural Bioinformatics Group, BIOTEC, TU-Dresden, Germany"