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News & Updates
Official Release PyMOL v2.4 has been released on May 20, 2020.
Python 3 New Python 3 compatibility guide for scripts and plugins
Official Release PyMOL v2.3 has been released on February 11, 2019.
POSF New PyMOL fellows announced for 2018-2019
Tutorial Plugins Tutorial updated for PyQt5
New Plugin ProBiS H2O is a new plugin for identification of conserved waters in protein structures.
Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
Older News See Older News.
Did you know...

Sst

Included in psico
This command or function is available from psico, which is a PyMOL extension.

Module psico.editing

sst is a wrapper for the SST secondary structural assignment web service. The command updates PyMOL's ss atom property.

SST does minimum message length inference of secondary structure based on C-alpha atom positions.

Usage

sst [ selection [, raw [, state ]]]

Arguments

  • selection = str: atom selection {default: all}
  • raw = str: atom property to assign the sst secondary structure type to. This type will also be translated to PyMOL's H/S/L types and assiged to the ss property {default: }
  • state = int: object state {default: -1 (current state)}

Example

import psico.editing
fetch 1ubq, async=0

sst all, raw=custom
as cartoon

color gray
spectrum custom, selection=guide
set cartoon_discrete_colors, 1
label guide, custom

See Also

A Random PyMOL-generated Cover. See Covers.