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! Official Release
 
! Official Release
| [https://pymol.org PyMOL v2.4 has been released] on May 20, 2020.
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| [https://pymol.org PyMOL v2.5 has been released] on May 10, 2021.
 
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! Python 3
 
! Python 3
 
| New [[2to3|Python 3 compatibility guide]] for scripts and plugins
 
| New [[2to3|Python 3 compatibility guide]] for scripts and plugins
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! Official Release
 
| [https://pymol.org PyMOL v2.3 has been released] on February 11, 2019.
 
 
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! POSF
 
! POSF
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! New Plugin
 
! New Plugin
| [[ProBiS_H2O|ProBiS H2O]] is a new plugin for identification of conserved waters in protein structures.
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| [[PICv|PICv]] is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe
 
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! Selection keywords
 
! Selection keywords

Latest revision as of 03:21, 22 June 2021

hosted by SBGridlogo2.jpg
Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
To request a new account, email SBGrid at: accounts (@) sbgrid dot org
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
Official Release PyMOL v2.5 has been released on May 10, 2021.
Python 3 New Python 3 compatibility guide for scripts and plugins
POSF New PyMOL fellows announced for 2018-2019
Tutorial Plugins Tutorial updated for PyQt5
New Plugin PICv is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe
Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
Older News See Older News.
Did you know...

Pml2py

This script converts a pml script to a python script.

See pymol-users mailing list (Subject: Convert pml script to Pymol Python script, Fri, 8 Apr 2011).

<source lang="python"> from __future__ import print_function

import sys from pymol import cmd, parsing

def pml2py(filename, out=sys.stdout):

   

DESCRIPTION

   Convert a pml script to python syntax.

USAGE

   pml2py infile [, outfile]
   
   def quote(args):
       args = iter(args)
       for arg in args:
           if '=' not in arg:
               prefix = 
           else:
               prefix, arg = arg.split('=', 1)
               prefix += '='
               arg = arg.lstrip()
           yield prefix + repr(arg)
   class stackiter:
       def __init__(self, collection):
           self.iterator = iter(collection)
           self.stack = []
       def __iter__(self):
           return self
       def next(self):
           if len(self.stack):
               return  ..→
A Random PyMOL-generated Cover. See Covers.