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Revision as of 03:58, 4 March 2019

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Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
To request a new account, email SBGrid at: accounts (@) sbgrid dot org
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
Python 3 New Python 3 compatibility guide for scripts and plugins
Official Release PyMOL v2.3 has been released on February 11, 2019.
POSF New PyMOL fellows announced for 2018-2019
Tutorial Plugins Tutorial updated for PyQt5
New Plugin ProBiS H2O is a new plugin for identification of conserved waters in protein structures.
Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
Older News See Older News.
Did you know...

Rasmolify

Here it is! Long awaited, less tested;

Install

Linux
In your ~/.pymolrc set something like the following
 run ~/pymolscripts/rasmolify.py 
Finally, make a directory called ~/pymolscripts and copy the code below into a file called rasmolify.py - That should do the trick. You may also like to add a line that reads
set virtual_trackball, off
in your ~/.pymolrc
Windows
???

Usage

Think 'rasmol'

Related

TODO

  • Check if a 'selection' exists, and limit commands to that selection (map the concept of a rasmol 'selection' onto the concept of a pymol selection).
  • Implement 'scaling' units for display functions
  • Fix the mouse behaviour?
  • Add a rasmol GUI!

Code

<source lang="python">

    1. This is just a quick hack. For something more meaty see;
    2. http://arcib.dowling.edu/sbevsl/
    1. Version 0.0.00-000/1


    1. Turn off the virtual_trackball

cmd.set("virtual_trackball", "off")


    1. spacefill

def spacefill(p1=):

   if(p1=='off'):
        ..→
A Random PyMOL-generated Cover. See Covers.