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News & Updates
Poll New protein/nucleic selection keywords for PyMOL - Tell us what you think!
Official Release PyMOL v2.0 has been released on September 20, 2017.
Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL
Official Release PyMOL v1.8.6 has been released on March 9, 2017.
Official Release PyMOL v1.8.4 has been released on October 4, 2016.
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
New Plugin LiSiCA is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm.
Official Release PyMOL v1.8.0 has been released on Nov 18, 2015.
PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship
Official Release PyMOL, AxPyMOL, and JyMOL v1.7.6 have all been released on May 4, 2015.
New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds.
New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
Older News See Older News.
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Mset

mset sets up a relationship between molecular states and movie frames. This makes it possible to control which states are shown in which frame.

The related command madd appends to the end of a movie. It is identical to the mset command, except for the default value of the frame argument (0 instead of 1).

Usage

mset specification [, frame ]
madd specification [, frame ]

Arguments

  • specification = str: state sequence (see below for syntax), or empty string to delete movie {default: }
  • frame = int: start frame, or 0 to append to the end of an existing movie {default: 1 (0 for madd)}

Specification Syntax

The state sequence specification consists of numbers, and the operators "x" and "-". Spaces between operators are optional.

Operator semantic:

  • state x count: Repeat state state for count frames
  • state1 - state2: Iterate from state1 to state2, yields abs(state1 - state2) + 1 frames

Formal syntax description:

A Random PyMOL-generated Cover. See Covers.